Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1932 408 3e-109 seq1058 123 2e-23 >seq1932 Length=74184 Score = 408 bits (452), Expect = 3e-109 Identities = 1244/1894 (66%), Gaps = 80/1894 (4%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| || ||||| || | | || ||| |||| || | || ||||||||||| ||| Sbjct 60014 TCGACGGTAAACTGAATAGGAGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTC 59955 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196 ||||| ||| ||| || ||||||||| | || | || |||| | | |||| || Sbjct 59954 TTGAGACCAAGCTTCCAGCCAGCGAAATGCAT-GCTGGTGATCTTGCCCATTGTCGGGTC 59896 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || || | ||||| ||| |||||| | ||||||||| |||||||| Sbjct 59895 CTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAGGCACCACGATCGGCAGCCAT 59836 Query 65257 GT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCT 65312 | ||| | | || | || || |||||||||||||||||||| | | | |||| Sbjct 59835 CTGGACAACGGTGCGCTGG---GAGATTTCCCAGACGGTCTTGTACAGA-GCCTTGACCT 59780 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 | ||||| | |||| ||| || |||||| ||||| || || || || Sbjct 59779 CGGCGGGAATGTTGGGGATGTTCTGAACGGAACCATTCTCGGCAATGATACGGTTCTTCA 59720 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432 | | || ||||| || |||| |||| |||| | || || | |||| || | Sbjct 59719 TGGCATCGGACCATAAGCCCATGTCGACGAGATCCTTAAGCAGCCAGGGGTTGACAACCT 59660 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||||| || ||||| || ||||||||||| ||| ||| || ||| | | Sbjct 59659 GGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACT 59600 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | ||||||| | || |||| ||| || ||||| ||||||||||| || | || || Sbjct 59599 CGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACAAGCAGACTGT 59540 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTC-----GTCCCAGTTCCACATCGG 65607 | || | |||| ||| || | || | ||| |||||||| ||| | || Sbjct 59539 TGCGAACACCGTG---TTCCTTGATCTGCTCC--TTCAGAGAGTCCCAGTCCCAGA--GG 59487 Query 65608 TTTATCGTC--GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGT 65665 | | | ||||| | ||||| || | || ||| | || |||| | | Sbjct 59486 TCAGAGGGCTTGACATTC------CACATGTCGTACTGAAGGATACC----CTGGGAGAT 59437 Query 65666 ----GAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGC---TGGT 65718 || || | | | ||| ||||||||| |||| |||||| | |||| Sbjct 59436 AGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGACATGGT 59377 Query 65719 CTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCAT 65777 | || || || || |||||||||||||| | || || || || || |||||| Sbjct 59376 C---AGAGCAGCGTGGTAGATGGTCTCGAAAAT-CTTCTTGTTGAGATCGCGAGCCTCAG 59321 Query 65778 CGCTCTCGTACGGCATACCCATCAGGACAA---AAGTGTCGGCCAGACCTTGAACTCCAA 65834 |||| | ||||| | | || ||| | | || || ||||| || || |||| Sbjct 59320 GAGACTCGAAAGGCATGCGTA---GGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAA 59264 Query 65835 TACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGA 65894 ||||||||||| ||||||| ||| | |||||||| || ||||||| |||| Sbjct 59263 GGCCGATGGGACGGTGACGCATGTTGCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTTGA 59204 Query 65895 TATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC-- 65952 ||| || || |||| ||||| || || || || | ||| | ||| Sbjct 59203 CATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGA--CCTCGTGAAGCTTCTG 59146 Query 65953 GAAATCAAAATGTTTAGGACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCA 66010 |||||| || | || ||| | ||| | || || | || |||||| Sbjct 59145 GAAATC-----GTAGAC-ACCCTCGTTGTAGT--------CAACGAAGGTAGGCAGGGCA 59100 Query 66011 AGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTG 66070 ||||| || | |||||| ||||| | ||| ||||| ||| ||||| | || || ||| Sbjct 59099 AGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTG 59040 Query 66071 CACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCA 66130 || ||||| || ||| ||||| || | |||| || || |||||||| || || Sbjct 59039 CAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCG 58980 Query 66131 TCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAA 66190 |||||||| | |||| | || ||||||||||| || | ||| | |||||||| |||| Sbjct 58979 TCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAA 58920 Query 66191 AGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAG 66249 || | ||||| | || | | | |||| |||| ||| ||||| | ||||| | Sbjct 58919 AGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAA 58861 Query 66250 GTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAG 66309 | ||||| || || | || | ||| | || |||| || |||||||| || Sbjct 58860 GGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAG 58801 Query 66310 CGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTA 66369 | ||| || | | || || || | ||| || ||||| || |||||||||||| Sbjct 58800 GGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAG 58741 Query 66370 GAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTC 66429 ||| || || || || || |||||| ||||||| || ||||||||||| | |||||| Sbjct 58740 GAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTC 58681 Query 66430 AAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCC 66489 ||||| ||||| ||||| || || |||||||||||||| | || ||| ||| ||| Sbjct 58680 AAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCC 58621 Query 66490 ACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTT 66549 ||| ||||||||||||||||| |||||||||||||| | ||| || | || ||||| Sbjct 58620 ACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTT 58561 Query 66550 AGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAG 66609 ||| |||| ||||||||| | || ||| || || || ||| ||| | || || Sbjct 58560 AGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAG 58501 Query 66610 ACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TCG-GCCACTGTCCGGAATATG 66667 |||||| ||||| ||| |||| ||||| || || || | |||| | | || Sbjct 58500 ACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTC--GTAGATA 58443 Query 66668 CCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGT 66727 || ||||||||||| |||| ||| | |||| |||||||| || ||| | || Sbjct 58442 CCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGG 58383 Query 66728 GTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTG 66787 || |||| |||||| ||||| | ||||| || ||| | | || |||||| ||| Sbjct 58382 GTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTG 58323 Query 66788 TACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAG 66846 || ||||| ||||| |||| | || || || |||| ||| ||| ||||| | Sbjct 58322 TAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACA-CGCATGAT 58264 Query 66847 GAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAG 66906 | || || || | ||| | | | | | || | || | ||| || | ||||| Sbjct 58263 CATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGATCTCTCCAG 58204 Query 66907 GGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 ||| |||| ||| ||||| ||| ||||| ||| Sbjct 58203 GGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCG 58170 >seq1058 Length=49244 Score = 123 bits (136), Expect = 2e-23 Identities = 338/506 (67%), Gaps = 19/506 (4%) Strand=Plus/Minus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGAT 61492 ||| || || |||||||| || ||||||| | | | | | || | || | | || Sbjct 16572 GAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAGCT-CTTCCTTCGCCCAGCGGC 16514 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || | || || || | ||||||||| | || ||||| || | || ||| | ||||| | Sbjct 16513 TGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCT 16454 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| ||||| || |||||||||||||||||| ||| ||| | || || || | Sbjct 16453 GGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTG 16394 Query 61613 ACGAGGGCATGCATTGTGATTTTGC-TG--TTTTGCTATTCAAACGCTATCTGGTGAATC 61669 | ||||| | || || ||||| || | ||| || || || || | | | Sbjct 16393 ATGAGGGTCTCCACACCGACTTTGCCTGCCTCTTG-TACTCTCAC-----CTCAAGCACC 16340 Query 61670 GTCCGTCGGAGGAGCGTGTGGGTGAG---ATTGTTCGTGAGGCGGTAACTATCGAACAGG 61726 | || | | | ||| || |||| ||| | ||| || || | || || |||| Sbjct 16339 GCCC-TAGCA--AGCAGGTCATTGAGGACATTATCGTTGATGCCGTCAAGATTGAGCAGG 16283 Query 61727 AATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGC 61786 | || || || || ||| |||| | | ||| |||||||||| | | ||| || Sbjct 16282 AGTTCCTAACCGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAGC 16223 Query 61787 AGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTAT 61845 |||| || || || |||||||||||||| ||||| | | |||| | || || |||| Sbjct 16222 AGTACATCGAGTTCGTTGCCGACCGTCTCTTGGTTGCTCTTGGCAACGACAAGG-TCTAC 16164 Query 61846 AATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTT 61905 || | ||||| ||||| |||||||| | || || || | |||||||| || || Sbjct 16163 AAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTC 16104 Query 61906 TTCGAGAAACGTGTAGGCGACTATCA 61931 || ||||| || || | |||||| || Sbjct 16103 TTTGAGAAGCGCGTTGCCGACTACCA 16078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554549280640