Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq682 109 2e-18
>seq682
Length=146227
Score = 109 bits (120), Expect = 2e-18
Identities = 183/264 (69%), Gaps = 8/264 (3%)
Strand=Plus/Plus
Query 21629 AGAAACACCCGTGGAGCCATATCCTCCCTCGCCGCGCTTGGTCTCGCCGAGCTCGCCCTT 21688
||| ||||| ||| |||| | || || |||||||| | |||| ||||||||
Sbjct 29445 AGAGACACCGGTGCTGCCAAACCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCG----- 29499
Query 21689 TTGCGCCTGCTGCAAAA-CTGGGGTCGAGATGCGTTCCAGGATGAGTTGGGCGATGCGAT 21747
||| | | | | | ||||| ||||||| || | |||||| ||||||||||| |
Sbjct 29500 --GCGACCTCGACGATCTCGGGGGTGAAGATGCGCTCAATGATGAGCTGGGCGATGCGGT 29557
Query 21748 CGCCATGCTTGATTTCAAAGTCCTGGTCAGAGTGGTTGAAGAGCACCACCCCGACCTTGC 21807
|||| | || ||||||||| ||| | |||||||||||| | ||| ||||| ||
Sbjct 29558 CGCCCTCGGCGACCTCAAAGTCCGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGC 29617
Query 21808 CCCTATAAGAACTGTCGACGACCCCGGCGCCGACGTCGAGCCCGTTCTTCAAGGCCAGAC 21867
| | || ||||| ||| |||||||| ||||| |||||| |||| || |
Sbjct 29618 CGCGGTAGTCGGCGTCGATGACGCCGGCGCCCGTGTCGATGAAGTTCTTGGAGGCGAGGC 29677
Query 21868 CCGATCTGGGAGCGACGCGGCCGT 21891
| || | ||| |||||||||||||
Sbjct 29678 CGGAGCGGGGGGCGACGCGGCCGT 29701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084663242527248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |