Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq725 280 3e-73 seq87 212 1e-52 >seq725 Length=7169 Score = 280 bits (310), Expect = 3e-73 Identities = 250/312 (80%), Gaps = 1/312 (0%) Strand=Plus/Plus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66 |||||||||||||||| || | || ||| || ||||| | | ||| | | | || Sbjct 1542 GTCCGGCCGGGCCTTTTTTTTTATAGAACCGTATACCCTTTATTAGGTATACTAGAGAAA 1601 Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126 |||||||||| ||| ||||||||||||| || | | |||||||| |||||||| |||| Sbjct 1602 TAGGACTTTTATTTTAAAAAAATTAGAGTACTCTAGGTAGGCCTTTACTCGAATATATTA 1661 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 || ||||||| ||||||||||| ||| |||||| || ||||||| ||||||||||| Sbjct 1662 ATATAAAATAATAAAATAGGACGTGTAGTTTTATTTTATTAGTTTCTAAGACCGCCGTAA 1721 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 | |||||||||||||||||||||| | |||||| |||| | |||||| |||||||| ||| Sbjct 1722 TAATTAATAGGGATAGTCGGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGAT 1781 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 ||||| || | ||||||||||||||| || || |||||| |||| ||| || | |||| Sbjct 1782 TTATTAAAAATTAACTACTGCGAAAGTATTTACTAAGGATATTTTTATTTATTA-AGAAC 1840 Query 307 GAAAGTTAGGGG 318 |||| ||||||| Sbjct 1841 GAAAATTAGGGG 1852 >seq87 Length=11394 Score = 212 bits (234), Expect = 1e-52 Identities = 230/304 (76%), Gaps = 1/304 (0%) Strand=Plus/Plus Query 12 GCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA 71 ||||||||||| || | || ||| |||| || | | ||| | | ||| |||| Sbjct 1788 GCCGGGCCTTTTTTTTTATAGAACCGTATGCTTTTTATTAGGTATACTAAGGAAATAGGA 1847 Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATG 131 ||||| ||| |||||||||||||| || ||| |||||||| ||||||| |||| || Sbjct 1848 TTTTTATTTTAAAAAAATTAGAGTGCTCTAAGTAGGCCTTTATTCGAATATATTAATATA 1907 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||||||||| ||||| || |||||| || |||| |||||| || |||| ||| Sbjct 1908 GAATAATAGAATAAGACGTATAATTTTATTTTATTAGTTTTTAGGACTGCTATAATAATT 1967 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||| ||||||| ||||| | |||||| |||| | |||||||||||| || |||||||| Sbjct 1968 AATAAGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTTTTAGATTTATT 2027 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 |||||||| || | |||| || | || ||| |||| ||| || | ||||||||| Sbjct 2028 AAAGACTAATTATTATAAAAGTATTTGCTAAAGATATTTTTATTTATTA-AGAACGAAAG 2086 Query 312 TTAG 315 |||| Sbjct 2087 TTAG 2090 Score = 165 bits (182), Expect = 1e-38 Identities = 190/256 (74%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 68 AGGACTTTTACTTTGAAAAAATTAGAGT-------GTTCAAAGCAGGCCTTTGCTCGAAT 120 |||||||||| ||| |||||||||| | || || |||||||| | ||| Sbjct 8993 AGGACTTTTATTTTAAAAAAATTAGNNNNNNNNNNGCTCTAAATAGGCCTTTATTTAAAT 9052 Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 180 | |||| || ||||||| |||||||||| |||||||||| || ||||||| ||||| Sbjct 9053 ATATTAATATAAAATAATAAAATAGGACGTATAGTTCTATTTTATTAGTTTCTAAGACCG 9112 Query 181 CCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTC 240 || |||| ||||||| ||||| ||||| | | |||| |||| | |||||| ||||| Sbjct 9113 CCATAATAATTAATAAAAATAGTTAGGGGTATTAATATTTAATTATTAGAGGTAAAATTG 9172 Query 241 TTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 || |||||||| || ||||| || | | ||||| || | || || |||| ||| || | Sbjct 9173 TTAGATTTATTAAAAACTAATTATTACAAAAGCATTTATTAAAAATATTTTTATTTATTA 9232 Query 301 GTGAACGAAAGTTAGG 316 |||||||||||||| Sbjct 9233 A-GAACGAAAGTTAGG 9247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915191497792