Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq725 141 4e-31 >seq725 Length=7169 Score = 141 bits (156), Expect = 4e-31 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 |||||| || |||||| ||| |||| ||||| | ||||||| ||| || |||| | Sbjct 3393 AAGCTCTTTTAACGAGTTAAGTAGTTTAGGAATACTATTCTAAATAGGAAATATATTTTT 3452 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 | |||| ||||||||| || |||||||||||| | ||||||| | || ||| || || Sbjct 3453 TTTAAAACTAAATATTAGCTAGAGACCGATAGTATATAAGTAGAATAATTAAAAAATAAA 3512 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||| | ||| |||||| |||||| || |||| ||||| || ||| |||||||||| || Sbjct 3513 AAGTATTTTAAAAAGAGGGTTAAATAGTACGTAAAATTATTAAAAAGGAAGCGCTTATAA 3572 Query 207 CCAGACTT 214 | |||||| Sbjct 3573 CTAGACTT 3580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079980072950