Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq725 185 1e-44 seq87 105 1e-20 >seq725 Length=7169 Score = 185 bits (204), Expect = 1e-44 Identities = 194/254 (76%), Gaps = 1/254 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| | |||| | | | || ||| | | |||||||||||||||||| || | | | Sbjct 2339 ACTCGCTAGCTCTATTAATATAACGCACATATAGCCCAGAACATCTAAGGGTATTATAAA 2280 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||| ||||| ||||||||||| ||| ||| |||| |||| ||||||||| |||||||| Sbjct 2279 CCTATTATTACCTCAAACTTCTATTAGCTT-AAGCTAATAATCCCTCTAAAAAGCCAGCG 2221 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 | | | ||| | ||||||||| | |||| |||||||| |||| | |||||| Sbjct 2220 TACTATTAAAGTAATACGAGCTATTTAGTAAATTAAAGTCTCGTTTATTATTGTAATTAA 2161 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||| |||||||||||| |||||||||||||||| ||| ||||| ||| ||| || || Sbjct 2160 ATAGATAAATCACTCCACTAACTAAGAACGGCCATACACTACCACTTATAAAATTAAAAA 2101 Query 242 AGAGCTATCAATCT 255 | |||| ||||||| Sbjct 2100 AAAGCTCTCAATCT 2087 >seq87 Length=11394 Score = 105 bits (116), Expect = 1e-20 Identities = 153/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98 |||| |||||| | || | | |||| ||||| ||| |||||| ||| || |||| | Sbjct 2565 AGAATATCTAAAAGTATTATAAACCTATTATTACCTTAAACTTTTATTAACTT-AAGCTA 2507 Query 99 ATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAG 158 ||| ||||||||| |||| || || | | | | |||||||| | ||||| Sbjct 2506 ATAATCCCTCTAAAAAGCTAGTATATTACTAAAATAATACGAGCTATTTAATAAGTTAAA 2447 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||| |||||| | | |||| |||| || ||||||||||||| || Sbjct 2446 ATCTCGTTCGTTATTATAATTAAGTAAATAAATTACTCTACTAACTAAGAACGGCTATAT 2387 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 || || ||| ||| ||| || ||| |||| | ||| Sbjct 2386 ACTACTACCTATAAAATTAAAAAAAAGCTCTTAAT 2352 Score = 95.1 bits (104), Expect = 2e-17 Identities = 173/252 (69%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| | |||| | | | || ||||||||||||| | || || ||| | || | | | Sbjct 9749 ACTCGCTAGCTCTATTAATATAACGCGCGTGCGGCCTAAAATATTTAAAAGTATTATAAA 9690 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 | | ||||| | ||| || || || | |||| |||| || || ||| |||| || Sbjct 9689 CTTATTATTATTTTAAATTTTTATCGGTTT-AAGCTAATAATCTCTTTAAAAAGCTGGCG 9631 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 | | ||| ||||||||||| | ||||| |||||||||||||| |||||| Sbjct 9630 TATTATTAAAGTAATACGGGCTATTTAGTAAGTTAAAGTCTCGTTCGTTATTATAATTAA 9571 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||| |||| | | || |||||| |||||| || | || || ||| ||| || || Sbjct 9570 ATAGATAAATTATTTTACTAACTAAAAACGGCTATATATTACTACTTATAAAATTAAAAA 9511 Query 242 AGAGCTATCAAT 253 |||||| | ||| Sbjct 9510 AGAGCTCTTAAT 9499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796792829049