Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq725 185 1e-44
seq87 105 1e-20
>seq725
Length=7169
Score = 185 bits (204), Expect = 1e-44
Identities = 194/254 (76%), Gaps = 1/254 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| | |||| | | | || ||| | | |||||||||||||||||| || | | |
Sbjct 2339 ACTCGCTAGCTCTATTAATATAACGCACATATAGCCCAGAACATCTAAGGGTATTATAAA 2280
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
||| ||||| ||||||||||| ||| ||| |||| |||| ||||||||| ||||||||
Sbjct 2279 CCTATTATTACCTCAAACTTCTATTAGCTT-AAGCTAATAATCCCTCTAAAAAGCCAGCG 2221
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
| | | ||| | ||||||||| | |||| |||||||| |||| | ||||||
Sbjct 2220 TACTATTAAAGTAATACGAGCTATTTAGTAAATTAAAGTCTCGTTTATTATTGTAATTAA 2161
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
||| |||||||||||| |||||||||||||||| ||| ||||| ||| ||| || ||
Sbjct 2160 ATAGATAAATCACTCCACTAACTAAGAACGGCCATACACTACCACTTATAAAATTAAAAA 2101
Query 242 AGAGCTATCAATCT 255
| |||| |||||||
Sbjct 2100 AAAGCTCTCAATCT 2087
>seq87
Length=11394
Score = 105 bits (116), Expect = 1e-20
Identities = 153/215 (71%), Gaps = 1/215 (0%)
Strand=Plus/Minus
Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98
|||| |||||| | || | | |||| ||||| ||| |||||| ||| || |||| |
Sbjct 2565 AGAATATCTAAAAGTATTATAAACCTATTATTACCTTAAACTTTTATTAACTT-AAGCTA 2507
Query 99 ATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAG 158
||| ||||||||| |||| || || | | | | |||||||| | |||||
Sbjct 2506 ATAATCCCTCTAAAAAGCTAGTATATTACTAAAATAATACGAGCTATTTAATAAGTTAAA 2447
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||||||||||| |||||| | | |||| |||| || ||||||||||||| ||
Sbjct 2446 ATCTCGTTCGTTATTATAATTAAGTAAATAAATTACTCTACTAACTAAGAACGGCTATAT 2387
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|| || ||| ||| ||| || ||| |||| | |||
Sbjct 2386 ACTACTACCTATAAAATTAAAAAAAAGCTCTTAAT 2352
Score = 95.1 bits (104), Expect = 2e-17
Identities = 173/252 (69%), Gaps = 1/252 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| | |||| | | | || ||||||||||||| | || || ||| | || | | |
Sbjct 9749 ACTCGCTAGCTCTATTAATATAACGCGCGTGCGGCCTAAAATATTTAAAAGTATTATAAA 9690
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
| | ||||| | ||| || || || | |||| |||| || || ||| |||| ||
Sbjct 9689 CTTATTATTATTTTAAATTTTTATCGGTTT-AAGCTAATAATCTCTTTAAAAAGCTGGCG 9631
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
| | ||| ||||||||||| | ||||| |||||||||||||| ||||||
Sbjct 9630 TATTATTAAAGTAATACGGGCTATTTAGTAAGTTAAAGTCTCGTTCGTTATTATAATTAA 9571
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
||| |||| | | || |||||| |||||| || | || || ||| ||| || ||
Sbjct 9570 ATAGATAAATTATTTTACTAACTAAAAACGGCTATATATTACTACTTATAAAATTAAAAA 9511
Query 242 AGAGCTATCAAT 253
|||||| | |||
Sbjct 9510 AGAGCTCTTAAT 9499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796792829049
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |