Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq725 215 9e-54 seq87 163 5e-38 >seq725 Length=7169 Score = 215 bits (238), Expect = 9e-54 Identities = 225/294 (77%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| ||| | ||| ||| || |||| |||||||||| | ||| | Sbjct 6129 TACTAAGCTTAATTACTATTACGACGA-GGTTATTAGTAAAATAAAACTAACTTATCTTA 6071 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | | ||||||||| |||||||||||| ||||| | || || |||| || ||||| | Sbjct 6070 TAATAGTCTAAACCTAGCTCACGTTCCTTATTAATAAGTAAATAATCTAATGCTTATTAA 6011 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| || ||| ||| |||| |||| ||| || ||| ||||||| |||| ||| Sbjct 6010 ATTCTATTTTAATATAATAAAAAGAACCGATATCAAAAGATTAAAAAGCGACGTTATTAT 5951 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||| || || | |||| |||||||| | | |||||||||| | ||||||||||| Sbjct 5950 AAACGCTTAGCCGCTATAAGCTAGTTATCCTTATAATAACTTTTCTAGTACCTCTAGCCT 5891 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||||| | |||||| ||| |||||||| ||||| || |||| |||||| Sbjct 5890 TAAATTTCGAAGAACTAAAAGATTAATAGGCCATACTTTTATAGTTTATATTCA 5837 >seq87 Length=11394 Score = 163 bits (180), Expect = 5e-38 Identities = 186/250 (74%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 |||||||||||| | |||| |||||||||||| | || ||||||| ||||| | || || Sbjct 6349 TAAAACTAACCTATTTCATAACGGTCTAAACCTAACTTACGTTCCTTATTAATAAGTAAA 6290 Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 ||| ||||||||| |||||| |||||||| ||| |||||| | || || || Sbjct 6289 TAATTTAACGCTTACTAAATTCTATTTCGGTATAATAAAAAGAGCTAATATTAAAAAATT 6230 Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 |||||| ||||| ||| ||| ||| || | | || | |||||||||| | |||||| Sbjct 6229 AAAAAGTAACGTTATTATAAACACTTAACTACTATAAACTAGTTATCCCTATAATAACTT 6170 Query 223 TTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCAT 282 || | ||||||||| | |||||| | |||||| || |||||||| ||||| || Sbjct 6169 TTTTAATACCTCTAGCTTTAAATTTTAAAAAACTAAAAAATTAATAGGCCATACTTTTAT 6110 Query 283 GGTTTGTATT 292 |||| |||| Sbjct 6109 AGTTTATATT 6100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854392062624