Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq725 215 9e-54
seq87 163 5e-38
>seq725
Length=7169
Score = 215 bits (238), Expect = 9e-54
Identities = 225/294 (77%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||| ||| | ||| ||| || |||| |||||||||| | ||| |
Sbjct 6129 TACTAAGCTTAATTACTATTACGACGA-GGTTATTAGTAAAATAAAACTAACTTATCTTA 6071
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
| | ||||||||| |||||||||||| ||||| | || || |||| || ||||| |
Sbjct 6070 TAATAGTCTAAACCTAGCTCACGTTCCTTATTAATAAGTAAATAATCTAATGCTTATTAA 6011
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||| || ||| ||| |||| |||| ||| || ||| ||||||| |||| |||
Sbjct 6010 ATTCTATTTTAATATAATAAAAAGAACCGATATCAAAAGATTAAAAAGCGACGTTATTAT 5951
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||| || || | |||| |||||||| | | |||||||||| | |||||||||||
Sbjct 5950 AAACGCTTAGCCGCTATAAGCTAGTTATCCTTATAATAACTTTTCTAGTACCTCTAGCCT 5891
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
||||||||| | |||||| ||| |||||||| ||||| || |||| ||||||
Sbjct 5890 TAAATTTCGAAGAACTAAAAGATTAATAGGCCATACTTTTATAGTTTATATTCA 5837
>seq87
Length=11394
Score = 163 bits (180), Expect = 5e-38
Identities = 186/250 (74%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102
|||||||||||| | |||| |||||||||||| | || ||||||| ||||| | || ||
Sbjct 6349 TAAAACTAACCTATTTCATAACGGTCTAAACCTAACTTACGTTCCTTATTAATAAGTAAA 6290
Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162
||| ||||||||| |||||| |||||||| ||| |||||| | || || ||
Sbjct 6289 TAATTTAACGCTTACTAAATTCTATTTCGGTATAATAAAAAGAGCTAATATTAAAAAATT 6230
Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222
|||||| ||||| ||| ||| ||| || | | || | |||||||||| | ||||||
Sbjct 6229 AAAAAGTAACGTTATTATAAACACTTAACTACTATAAACTAGTTATCCCTATAATAACTT 6170
Query 223 TTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCAT 282
|| | ||||||||| | |||||| | |||||| || |||||||| ||||| ||
Sbjct 6169 TTTTAATACCTCTAGCTTTAAATTTTAAAAAACTAAAAAATTAATAGGCCATACTTTTAT 6110
Query 283 GGTTTGTATT 292
|||| ||||
Sbjct 6109 AGTTTATATT 6100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854392062624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |