Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq725 178 1e-42
seq87 152 5e-35
>seq725
Length=7169
Score = 178 bits (196), Expect = 1e-42
Identities = 151/185 (82%), Gaps = 1/185 (1%)
Strand=Plus/Plus
Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC 66
|||||||||| ||| |||||||||||| || | | |||||||| |||||||| ||||
Sbjct 1603 AGGACTTTTATTTTAAAAAAATTAGAGTACTCTAGGTAGGCCTTTACTCGAATATATTAA 1662
Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126
|| ||||||| ||||||||||| ||| |||||| | ||||||| ||||| ||||||
Sbjct 1663 TATAAAATAATAAAATAGGACGTGTAGTTTTATTTTATTAGTTTCTAAGACCG-CCGTAA 1721
Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186
| || |||| |||||||||||||| | |||||| |||| | | |||| |||||||| |||
Sbjct 1722 TAATTAATAGGGATAGTCGGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGAT 1781
Query 187 TTATT 191
|||||
Sbjct 1782 TTATT 1786
>seq87
Length=11394
Score = 152 bits (168), Expect = 5e-35
Identities = 149/191 (78%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||| ||||| ||| |||||||||||| | || ||| |||||||| |||||||
Sbjct 1838 GGAAATAGGATTTTTATTTTAAAAAAATTAGAGTGCTCTAAGTAGGCCTTTATTCGAATA 1897
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || ||||||||||||| ||||| || |||||| | |||| |||||| |
Sbjct 1898 TATTAATATAGAATAATAGAATAAGACGTATAATTTTATTTTATTAGTTTTTAGGACTG- 1956
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| ||||| | |||||| |||| | | ||||||||||
Sbjct 1957 CTATAATAATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTT 2016
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 2017 TTAGATTTATT 2027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511995392160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |