Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq725 178 1e-42 seq87 152 5e-35 >seq725 Length=7169 Score = 178 bits (196), Expect = 1e-42 Identities = 151/185 (82%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC 66 |||||||||| ||| |||||||||||| || | | |||||||| |||||||| |||| Sbjct 1603 AGGACTTTTATTTTAAAAAAATTAGAGTACTCTAGGTAGGCCTTTACTCGAATATATTAA 1662 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 || ||||||| ||||||||||| ||| |||||| | ||||||| ||||| |||||| Sbjct 1663 TATAAAATAATAAAATAGGACGTGTAGTTTTATTTTATTAGTTTCTAAGACCG-CCGTAA 1721 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || |||| |||||||||||||| | |||||| |||| | | |||| |||||||| ||| Sbjct 1722 TAATTAATAGGGATAGTCGGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGAT 1781 Query 187 TTATT 191 ||||| Sbjct 1782 TTATT 1786 >seq87 Length=11394 Score = 152 bits (168), Expect = 5e-35 Identities = 149/191 (78%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||| ||||| ||| |||||||||||| | || ||| |||||||| ||||||| Sbjct 1838 GGAAATAGGATTTTTATTTTAAAAAAATTAGAGTGCTCTAAGTAGGCCTTTATTCGAATA 1897 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || ||||||||||||| ||||| || |||||| | |||| |||||| | Sbjct 1898 TATTAATATAGAATAATAGAATAAGACGTATAATTTTATTTTATTAGTTTTTAGGACTG- 1956 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| ||||| | |||||| |||| | | |||||||||| Sbjct 1957 CTATAATAATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTT 2016 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 2017 TTAGATTTATT 2027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511995392160