Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq725 161 2e-37 seq87 113 9e-23 >seq725 Length=7169 Score = 161 bits (178), Expect = 2e-37 Identities = 220/306 (72%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 23 CGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGG 82 |||||| |||| | ||||||||| | |||| | ||| ||||| ||||||| Sbjct 2178 CGAGACTTTAATTTACTAAATAGCTCGTATTACTTTAATAGTACGCTGGCTTTTTAGAGG 2237 Query 83 GACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGAT 142 || ||| ||| |||| || ||||||||||| ||||| |||| | | || ||||||||| Sbjct 2238 GATTATTAGCTTAAGCTAATAGAAGTTTGAGGTAATAATAGGTTTATAATACCCTTAGAT 2297 Query 143 GTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAA 202 ||||||||| | | ||| || | | | ||||| | ||||||| | || || ||| Sbjct 2298 GTTCTGGGCTATATGTGCGTTATATTAATAGAGCTAGCGAGTTCTT--TTTTAGCTAGAA 2355 Query 203 GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTC 262 || || |||||| || ||||||||||| | | ||||||||| ||| ||||||| | Sbjct 2356 GGCCTAGGTAATTTTATTAAACTCTGTTATATTAGGGATAGAGTATTATAATTATTATTT 2415 Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 || |||||||||| | ||||||| || || || | ||| ||||||||| ||| Sbjct 2416 TTTAACGAGGAATCCTTAGTAAGTATAAGTTATTAGTTTGTGTTAATTACGTCCTTGCTT 2475 Query 323 TTTGTA 328 ||| || Sbjct 2476 TTTATA 2481 >seq87 Length=11394 Score = 113 bits (124), Expect = 9e-23 Identities = 185/266 (70%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||| ||||| | |||||||||| | |||| |||| |||| ||| Sbjct 9585 GAACGAGACTTTAACTTACTAAATAGCCCGTATTACTTTAATAATACGCCAGCTTTTTAA 9644 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 || || ||| ||| || ||||| || ||| | ||||| | || | | || | ||| Sbjct 9645 AGAGATTATTAGCTTAAACCGATAAAAATTTAAAATAATAATAAGTTTATAATACTTTTA 9704 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 || || | ||||||||||||| || | | | ||||| | ||||||| | || || Sbjct 9705 AATATTTTAGGCCGCACGCGCGTTATATTAATAGAGCTAGCGAGTTCTT--TTTTAGCTA 9762 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||| || |||||| || ||||||||| | | || |||||||| ||| ||||||| Sbjct 9763 AAAGGCCTAGGTAATTTTATTAAACTCTATTATACTAAGGATAGAGTATTATAATTATTA 9822 Query 260 CTCTTCAACGAGGAATGCCTAGTAAG 285 || || || | |||| ||||||||| Sbjct 9823 CTTTTTAATAAAGAATCCCTAGTAAG 9848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947191200512