Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq725 302 1e-79 seq87 145 2e-32 >seq725 Length=7169 Score = 302 bits (334), Expect = 1e-79 Identities = 385/535 (72%), Gaps = 15/535 (3%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 |||| | ||| ||||||||| ||||| || || |||||||| | |||| |||||| Sbjct 5803 TTTTATTTTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAAAATACCTACGTTATAA 5744 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||||| | || | |||||| ||| |||||||| |||| | ||| | | ||||||| ||| Sbjct 5743 TTTAATAAATATACCGCCCTAGCTAAACTCCCTACCTAATAATATTTTTAACCCGGGTCG 5684 Query 128 GCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGAT 187 |||||| || |||||||| | |||| |||| ||| | Sbjct 5683 GCCCGCAAAAGACCTTAAAACTAGAAGNNNNNNNNNN------------GCTTTATTAAA 5636 Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTAT 247 ||| |||||||| ||||||||||| ||||||||| |||||||| ||||| || ||| Sbjct 5635 TAAATAAAAAAATAATAAGGGTAGTAATATTTCACTAGCGCCGAA---GCTCCTACCTAT 5579 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 ||| ||| || | || ||| | || | |||| ||| || || |||| |||||||| Sbjct 5578 CCTATACCCCTTATATCTTTTTATAATATTAAACTAAAGTTAAACTTAACAAGGTCTTCT 5519 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||| || ||| | |||||||||||||| ||| | |||| |||| ||| || ||| Sbjct 5518 TTCCCTACTAATTTTACTAAGCCCGTTCCCTTAGCTATAGTTTTGCTAAATAATAAATAA 5459 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 ||| | | |||||| |||||| ||| || || | |||||||| || |||||| |||| Sbjct 5458 GGATAATAAGAATCTTATTAATCTATTTATACGTATTACTAATTAAATAACGAGGTATTT 5399 Query 428 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTT 487 | || |||| ||||| ||| |||||||||| |||||| ||||| ||| |||| ||| Sbjct 5398 AGTTATTTTAAAAGAGTTATAATTACTCCCGCTATTTACCTACGCTTAGTTAAATTCCTT 5339 Query 488 CACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 | ||| | ||| |||| ||| || | |||| | ||| ||| || | ||||||| Sbjct 5338 TATTTTAATATTTAGAGTACTAGGTAAAAATTATATTACGTTAATACTACTTTCT 5284 >seq87 Length=11394 Score = 145 bits (160), Expect = 2e-32 Identities = 331/503 (66%), Gaps = 15/503 (3%) Strand=Plus/Minus Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGC 81 |||||||| |||| || || |||||||| | || | |||||| |||||| | || | | Sbjct 6050 AGATTTCTATTCTTTATAAGCCCCCCTTAAAATACTTACGTTATAGTTTAATAAATATAC 5991 Query 82 CGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGACC 141 ||| | | ||||||| || | | ||| | | |||| | | ||||||||||||| Sbjct 5990 TACCCTAACTAAACTCCTTACTTAATAATATTTTTAACCTAGGTTAGCCCGCGAAGGACT 5931 Query 142 TTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCG 201 |||| | | ||| |||| ||| | ||| |||||||| Sbjct 5930 TTAAAACTAAAAANNNNNNNNNN------------GCTTTATTAAATAAATAAAAAAATA 5883 Query 202 ATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAA 261 ||||| |||| ||||| ||| |||||||| ||||| |||||| ||| ||| || | Sbjct 5882 ATAAGAATAGTAATATTTTACTAGCGCCGAA---GCTCCTACTTATCCTATACCCCTTAT 5826 Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 || ||| | || | |||| | | ||||| || | |||||||||||| || ||| Sbjct 5825 ATCTTTTTATAATATTAAACTAAAATTAAGCTTAATAAGGTCTTCTTTCCTTACTAATTT 5766 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381 | ||||||||| |||| | | | |||| || ||| || ||| | | | | | Sbjct 5765 TACTAAGCCCGTTTCCTTAGTTATAGTTTTATTAAATAATAAATAAAAATAATAAAACTT 5706 Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 | ||||| ||| || || | |||||||| || | | | |||| ||||| |||| | Sbjct 5705 TTATTAATTTATTTATACGTATTACTAATTAAATAATAAAGTATTTAGCTACTTTAAAAA 5646 Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 | | ||| |||||| | ||||| |||| ||| |||| || | ||| | ||| | Sbjct 5645 AATTATAATTACTCTTACTATTTACTTATGCTTAGTTAAATTCTTTTATTTTAATATTTA 5586 Query 502 GAGCACTGGGCAGAAATCACATT 524 ||| ||| | |||||| | ||| Sbjct 5585 GAGTACTAAGTAGAAATTATATT 5563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635184808992