Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq725 302 1e-79
seq87 145 2e-32
>seq725
Length=7169
Score = 302 bits (334), Expect = 1e-79
Identities = 385/535 (72%), Gaps = 15/535 (3%)
Strand=Plus/Minus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
|||| | ||| ||||||||| ||||| || || |||||||| | |||| ||||||
Sbjct 5803 TTTTATTTTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAAAATACCTACGTTATAA 5744
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127
||||| | || | |||||| ||| |||||||| |||| | ||| | | ||||||| |||
Sbjct 5743 TTTAATAAATATACCGCCCTAGCTAAACTCCCTACCTAATAATATTTTTAACCCGGGTCG 5684
Query 128 GCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGAT 187
|||||| || |||||||| | |||| |||| ||| |
Sbjct 5683 GCCCGCAAAAGACCTTAAAACTAGAAGNNNNNNNNNN------------GCTTTATTAAA 5636
Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTAT 247
||| |||||||| ||||||||||| ||||||||| |||||||| ||||| || |||
Sbjct 5635 TAAATAAAAAAATAATAAGGGTAGTAATATTTCACTAGCGCCGAA---GCTCCTACCTAT 5579
Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307
||| ||| || | || ||| | || | |||| ||| || || |||| ||||||||
Sbjct 5578 CCTATACCCCTTATATCTTTTTATAATATTAAACTAAAGTTAAACTTAACAAGGTCTTCT 5519
Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367
||||| || ||| | |||||||||||||| ||| | |||| |||| ||| || |||
Sbjct 5518 TTCCCTACTAATTTTACTAAGCCCGTTCCCTTAGCTATAGTTTTGCTAAATAATAAATAA 5459
Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427
||| | | |||||| |||||| ||| || || | |||||||| || |||||| ||||
Sbjct 5458 GGATAATAAGAATCTTATTAATCTATTTATACGTATTACTAATTAAATAACGAGGTATTT 5399
Query 428 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTT 487
| || |||| ||||| ||| |||||||||| |||||| ||||| ||| |||| |||
Sbjct 5398 AGTTATTTTAAAAGAGTTATAATTACTCCCGCTATTTACCTACGCTTAGTTAAATTCCTT 5339
Query 488 CACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
| ||| | ||| |||| ||| || | |||| | ||| ||| || | |||||||
Sbjct 5338 TATTTTAATATTTAGAGTACTAGGTAAAAATTATATTACGTTAATACTACTTTCT 5284
>seq87
Length=11394
Score = 145 bits (160), Expect = 2e-32
Identities = 331/503 (66%), Gaps = 15/503 (3%)
Strand=Plus/Minus
Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGC 81
|||||||| |||| || || |||||||| | || | |||||| |||||| | || | |
Sbjct 6050 AGATTTCTATTCTTTATAAGCCCCCCTTAAAATACTTACGTTATAGTTTAATAAATATAC 5991
Query 82 CGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGACC 141
||| | | ||||||| || | | ||| | | |||| | | |||||||||||||
Sbjct 5990 TACCCTAACTAAACTCCTTACTTAATAATATTTTTAACCTAGGTTAGCCCGCGAAGGACT 5931
Query 142 TTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCG 201
|||| | | ||| |||| ||| | ||| ||||||||
Sbjct 5930 TTAAAACTAAAAANNNNNNNNNN------------GCTTTATTAAATAAATAAAAAAATA 5883
Query 202 ATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAA 261
||||| |||| ||||| ||| |||||||| ||||| |||||| ||| ||| || |
Sbjct 5882 ATAAGAATAGTAATATTTTACTAGCGCCGAA---GCTCCTACTTATCCTATACCCCTTAT 5826
Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321
|| ||| | || | |||| | | ||||| || | |||||||||||| || |||
Sbjct 5825 ATCTTTTTATAATATTAAACTAAAATTAAGCTTAATAAGGTCTTCTTTCCTTACTAATTT 5766
Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381
| ||||||||| |||| | | | |||| || ||| || ||| | | | | |
Sbjct 5765 TACTAAGCCCGTTTCCTTAGTTATAGTTTTATTAAATAATAAATAAAAATAATAAAACTT 5706
Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441
| ||||| ||| || || | |||||||| || | | | |||| ||||| |||| |
Sbjct 5705 TTATTAATTTATTTATACGTATTACTAATTAAATAATAAAGTATTTAGCTACTTTAAAAA 5646
Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501
| | ||| |||||| | ||||| |||| ||| |||| || | ||| | ||| |
Sbjct 5645 AATTATAATTACTCTTACTATTTACTTATGCTTAGTTAAATTCTTTTATTTTAATATTTA 5586
Query 502 GAGCACTGGGCAGAAATCACATT 524
||| ||| | |||||| | |||
Sbjct 5585 GAGTACTAAGTAGAAATTATATT 5563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635184808992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |