Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq725 316 6e-84 seq87 235 2e-59 >seq725 Length=7169 Score = 316 bits (350), Expect = 6e-84 Identities = 374/507 (74%), Gaps = 6/507 (1%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| ||||| |||||| ||||||||||| ||| | |||||||| | ||||| || Sbjct 1382 TACTTATTCTAATTATAAGACCTAAAAGAGCCCTATATTAATATTTATTATTACTACTTC 1323 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCT-----TGGATGTGGTAGC 116 ||||| |||||||| ||||||||||| | | || || | || | |||| Sbjct 1322 CCCGTATCGGGATTAGGTAATTTGCGTACTTACTACCNNNNNNNNNNTAAATATAATAGC 1263 Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCAT 176 ||||||| | |||| ||||||| |||| || ||| | ||||||| || || || Sbjct 1262 CGTTTCTTAAGCTCTTTCTCCGGGGTCGAGCCTTAACCCTCCGTTACTTATTATAACTAT 1203 Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 || |||| ||| || |||||| ||| |||||||| ||| ||| ||||| Sbjct 1202 ATTAAAATACTACTCTAGTATTAAAAGTTAATAAAAAAGAAATTTAAATAAACTATCGCT 1143 Query 237 GGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGT 296 || |||||| || ||||||| | |||||||| |||| | | ||||||||| || | Sbjct 1142 AGCGCAAGGCTATACGATTCGAAAGGTTATTATAAATCGCTAGTAAGCCCCGAAAGGTAT 1083 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCT 356 | |||||| || ||||||| ||||| |||| || || ||||||||| || |||||||| Sbjct 1082 TAGTTTTTAATTTAATAAACACACCTCTTCTAAAATCAAGGTTTTTAGTATATATTAGCT 1023 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 ||| |||||| | ||||| || || |||||||||||||||||||| |||||| || || Sbjct 1022 CTAAAATTACTATAATTATCTATATAATAAGGTACTATCAAATAAACAATAACTTATATA 963 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATC 476 || ||| ||||||||||| | || | ||| ||| ||||| | || || ||||||| Sbjct 962 ATAAGCTATTCGCAGTTTTATAATA-AAATTATTTAAACTTAAATATATATAGCTTAATT 904 Query 477 TTTGAGACAAGCATATGACTACTGGCA 503 ||| | | ||| |||| |||||| ||| Sbjct 903 TTTAAAATAAGTATATAACTACTAGCA 877 >seq87 Length=11394 Score = 235 bits (260), Expect = 2e-59 Identities = 349/492 (71%), Gaps = 2/492 (0%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| |||||||| ||| |||| |||||| ||| | |||||||| |||||||||| Sbjct 1623 TACTTATTCTAATTACAAAACCTAAAAAAGCCCTATATTAATATTTATTATCACTACCTC 1564 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGA-TGTGGTAGCCGTT 120 || | | |||| |||||||| || ||| || |||| || | | | |||||||| Sbjct 1563 CCTATATTAAGATTAGGTAATTTACGTACCTACTACCTTTTTTTAAATATAATAGCCGTT 1504 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||| | ||||| |||| |||| | |||| | |||||||| || || || || Sbjct 1503 TCTTAAGCTCCTTCTCTAAGGTCGAGCTCTAACCCTCCGTTACCTATTATAACTATACTA 1444 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||| || ||| || ||| |||||||| ||| ||| || | | Sbjct 1443 AAATACTACTCTAATATTAAAAATTAATAAAAAAGAAATTTAAATAAACTATTACTAGTA 1384 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||| || ||| |||||||||| |||| | | ||||||||| | || || Sbjct 1383 TAAGGCTATATAATTTAAGAAGTTATTATAAATCGCTAGTAAGCCCCGAAAAGTATTAGT 1324 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| || ||||||||||||| ||| ||||| ||||||| || |||||| |||| Sbjct 1323 TTTTAATTTAATAAATACACCTTTTCTAAAGTCAAAGTTTTTAATATATATTAGTTCTAA 1264 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| | |||||| || || ||| |||||| ||||||||||||||| || |||| | Sbjct 1263 AATTACTATAGTTATCTATATAATAAAATACTATTAAATAAACGATAACTTATATAATAA 1204 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 || ||| ||||||| || | ||| ||| ||||| | || || ||||||| ||| Sbjct 1203 GCTATTTATAGTTTCATAATA-AAATTATTTAAACTTAAATATATATAGCTTAATTTTTA 1145 Query 481 AGACAAGCATAT 492 | | ||| |||| Sbjct 1144 AAATAAGTATAT 1133 Score = 174 bits (192), Expect = 5e-41 Identities = 194/258 (75%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| ||| |||| |||||||||| ||| || || ||||| || || || ||| Sbjct 8532 AAGGCTATGTAATTCAAAAAGTTATTATAAATTACTAATAAGCCCTAAAAGGTATTAGTT 8473 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| || ||||||||||||| |||| || ||| |||||||| || ||||| || || | Sbjct 8472 TTTAATTTAATAAATACACCTCTTCTAAAATCGAGGTTTTTAATATATATTAACTTTAAA 8413 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | ||||| || || ||||||| ||| ||||||||||||||| || |||| || Sbjct 8412 ATTACTATAGTTATTTATATAATAAGGTATTATTAAATAAACGATAACTTATATAATAAG 8353 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||||||||||| | || | ||| ||| ||||| | || || ||||||| ||| | Sbjct 8352 CTATTCGCAGTTTTATAATA-AAATTATTTAAACTTAAATATATATAGCTTAATTTTTAA 8294 Query 482 GACAAGCATATGACTACT 499 | ||| |||| | |||| Sbjct 8293 AATAAGTATATAATTACT 8276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510385968384