Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq725 316 6e-84
seq87 235 2e-59
>seq725
Length=7169
Score = 316 bits (350), Expect = 6e-84
Identities = 374/507 (74%), Gaps = 6/507 (1%)
Strand=Plus/Minus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| |||| ||||| |||||| ||||||||||| ||| | |||||||| | ||||| ||
Sbjct 1382 TACTTATTCTAATTATAAGACCTAAAAGAGCCCTATATTAATATTTATTATTACTACTTC 1323
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCT-----TGGATGTGGTAGC 116
||||| |||||||| ||||||||||| | | || || | || | ||||
Sbjct 1322 CCCGTATCGGGATTAGGTAATTTGCGTACTTACTACCNNNNNNNNNNTAAATATAATAGC 1263
Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCAT 176
||||||| | |||| ||||||| |||| || ||| | ||||||| || || ||
Sbjct 1262 CGTTTCTTAAGCTCTTTCTCCGGGGTCGAGCCTTAACCCTCCGTTACTTATTATAACTAT 1203
Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236
|| |||| ||| || |||||| ||| |||||||| ||| ||| |||||
Sbjct 1202 ATTAAAATACTACTCTAGTATTAAAAGTTAATAAAAAAGAAATTTAAATAAACTATCGCT 1143
Query 237 GGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGT 296
|| |||||| || ||||||| | |||||||| |||| | | ||||||||| || |
Sbjct 1142 AGCGCAAGGCTATACGATTCGAAAGGTTATTATAAATCGCTAGTAAGCCCCGAAAGGTAT 1083
Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCT 356
| |||||| || ||||||| ||||| |||| || || ||||||||| || ||||||||
Sbjct 1082 TAGTTTTTAATTTAATAAACACACCTCTTCTAAAATCAAGGTTTTTAGTATATATTAGCT 1023
Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416
||| |||||| | ||||| || || |||||||||||||||||||| |||||| || ||
Sbjct 1022 CTAAAATTACTATAATTATCTATATAATAAGGTACTATCAAATAAACAATAACTTATATA 963
Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATC 476
|| ||| ||||||||||| | || | ||| ||| ||||| | || || |||||||
Sbjct 962 ATAAGCTATTCGCAGTTTTATAATA-AAATTATTTAAACTTAAATATATATAGCTTAATT 904
Query 477 TTTGAGACAAGCATATGACTACTGGCA 503
||| | | ||| |||| |||||| |||
Sbjct 903 TTTAAAATAAGTATATAACTACTAGCA 877
>seq87
Length=11394
Score = 235 bits (260), Expect = 2e-59
Identities = 349/492 (71%), Gaps = 2/492 (0%)
Strand=Plus/Minus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| |||| |||||||| ||| |||| |||||| ||| | |||||||| ||||||||||
Sbjct 1623 TACTTATTCTAATTACAAAACCTAAAAAAGCCCTATATTAATATTTATTATCACTACCTC 1564
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGA-TGTGGTAGCCGTT 120
|| | | |||| |||||||| || ||| || |||| || | | | ||||||||
Sbjct 1563 CCTATATTAAGATTAGGTAATTTACGTACCTACTACCTTTTTTTAAATATAATAGCCGTT 1504
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||| | ||||| |||| |||| | |||| | |||||||| || || || ||
Sbjct 1503 TCTTAAGCTCCTTCTCTAAGGTCGAGCTCTAACCCTCCGTTACCTATTATAACTATACTA 1444
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| ||| || ||| || ||| |||||||| ||| ||| || | |
Sbjct 1443 AAATACTACTCTAATATTAAAAATTAATAAAAAAGAAATTTAAATAAACTATTACTAGTA 1384
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||| || ||| |||||||||| |||| | | ||||||||| | || ||
Sbjct 1383 TAAGGCTATATAATTTAAGAAGTTATTATAAATCGCTAGTAAGCCCCGAAAAGTATTAGT 1324
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| || ||||||||||||| ||| ||||| ||||||| || |||||| ||||
Sbjct 1323 TTTTAATTTAATAAATACACCTTTTCTAAAGTCAAAGTTTTTAATATATATTAGTTCTAA 1264
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||| | |||||| || || ||| |||||| ||||||||||||||| || |||| |
Sbjct 1263 AATTACTATAGTTATCTATATAATAAAATACTATTAAATAAACGATAACTTATATAATAA 1204
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
|| ||| ||||||| || | ||| ||| ||||| | || || ||||||| |||
Sbjct 1203 GCTATTTATAGTTTCATAATA-AAATTATTTAAACTTAAATATATATAGCTTAATTTTTA 1145
Query 481 AGACAAGCATAT 492
| | ||| ||||
Sbjct 1144 AAATAAGTATAT 1133
Score = 174 bits (192), Expect = 5e-41
Identities = 194/258 (75%), Gaps = 1/258 (0%)
Strand=Plus/Minus
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
||||| ||| |||| |||||||||| ||| || || ||||| || || || |||
Sbjct 8532 AAGGCTATGTAATTCAAAAAGTTATTATAAATTACTAATAAGCCCTAAAAGGTATTAGTT 8473
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
||| || ||||||||||||| |||| || ||| |||||||| || ||||| || || |
Sbjct 8472 TTTAATTTAATAAATACACCTCTTCTAAAATCGAGGTTTTTAATATATATTAACTTTAAA 8413
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||| | ||||| || || ||||||| ||| ||||||||||||||| || |||| ||
Sbjct 8412 ATTACTATAGTTATTTATATAATAAGGTATTATTAAATAAACGATAACTTATATAATAAG 8353
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| ||||||||||| | || | ||| ||| ||||| | || || ||||||| ||| |
Sbjct 8352 CTATTCGCAGTTTTATAATA-AAATTATTTAAACTTAAATATATATAGCTTAATTTTTAA 8294
Query 482 GACAAGCATATGACTACT 499
| ||| |||| | ||||
Sbjct 8293 AATAAGTATATAATTACT 8276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510385968384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |