Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq572 340 1e-88 seq686 138 9e-28 >seq572 Length=609512 Score = 340 bits (376), Expect = 1e-88 Identities = 1226/1891 (65%), Gaps = 74/1891 (4%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | || ||| |||| || | || ||||||||||| ||| Sbjct 16428 TCGACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTC 16487 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196 ||||| ||| ||| | ||| ||||| || | || |||| | | |||| || Sbjct 16488 TTGAGACCAAGCTTCCAGCCGGCGAAGTGCATAC-TGGTGATCTTGCCCATTGTCGGGTC 16546 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || || | ||||| ||| |||||| | |||||| || |||||||| Sbjct 16547 CTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCGGCAGCCAT 16606 Query 65257 GT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCT 65312 | ||| | | || | |||||||||||||||||||||||||| | | | |||| Sbjct 16607 CTGAACAACGGTGCGCTGG---GATATCTCCCAGACGGTCTTGTACAGA-GCCTTGACCT 16662 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 || ||||| | |||| ||||| ||||| || || || || || || Sbjct 16663 CAGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGGTTCTTCA 16722 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432 | | || ||||||| |||| |||| |||| | | ||| | || | || | Sbjct 16723 TGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGGTTAACAACCT 16782 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||||| || |||||||| ||||||||||| ||| || || ||| | | Sbjct 16783 GGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATGGCTCGAAGCACT 16842 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | ||||||| | || || | ||| || ||||| ||||||||||| || | ||| || Sbjct 16843 CGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAAACTGT 16902 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612 | |||| |||| | | || | | || |||||| | ||| | ||| Sbjct 16903 TGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAGA--GGTCAGA 16960 Query 65613 CGTC--GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGT----G 65666 | | ||||| | ||||| || | || ||| | || |||| | | | Sbjct 16961 GGGCTTGACATTC------CACATGTCGTACTGGAGGATACC----CTGGGAGATAGGGG 17010 Query 65667 AACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA-CAGC--TGGTCTCGA 65723 | || | | | ||| |||||||||||||| || ||| ||| ||||| | Sbjct 17011 AGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATGGTC---A 17067 Query 65724 GTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCATCGCTC 65782 | || || || ||||||||||| || | || || || ||||| ||||| | Sbjct 17068 GAGCAGCGTGGTAGATGGTCTCGAAGAT-CTTCTTGTTGAGATCACGGGCCTCGGGAGAC 17126 Query 65783 TCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATG 65842 ||| | ||||| | | || |||| || || ||||| || || || | ||| ||| Sbjct 17127 TCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCAATG 17186 Query 65843 GGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATA 65902 || || ||||||| ||| | ||||| || || ||||||| |||| ||| || Sbjct 17187 GGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATG 17246 Query 65903 ATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC--GAAATCAA 65960 || ||||| ||||| || || || || | ||| | ||| ||| || Sbjct 17247 ATCTTGTTCAAGTTGCGAACAACGACCTGAGTGA--CCTCGTGAAGCTTCTGGAAGTC-- 17302 Query 65961 AATGTTTAGGACGATCG--GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGC 66018 || | || |||| | ||| | || || |||| || ||||| || || Sbjct 17303 ---GTAGAC-ACCATCGTTGTAGT--------CAACGAAGGTGGGCAGAGCAAGGGAAGC 17350 Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078 | |||||||||||| | |||||| || ||| ||||| | || || ||||| || || Sbjct 17351 CAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAGGTT 17410 Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138 || ||| || || || | |||| || || |||||||| ||| ||||||||||| Sbjct 17411 GGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTA 17470 Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCG 66198 | |||| | || |||| ||||| || | ||| | |||||| | |||||| | Sbjct 17471 AAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTTCTG 17530 Query 66199 TGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGA 66257 ||||| | || | | | |||| || | ||| ||||| | ||||| | | |||| Sbjct 17531 GGCCTTGATGGT-CTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGA 17589 Query 66258 AGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAAT 66317 | || || | || | ||| | || |||| | || ||||| || | ||| | Sbjct 17590 ACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGT 17649 Query 66318 CACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGAT 66377 | | | || || || | ||| || ||||| || |||||||| ||| ||| || | Sbjct 17650 CGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGT 17709 Query 66378 CGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGT 66437 | || || || |||||| |||| || || ||||||||||| | |||||| |||| || Sbjct 17710 CACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAGACGT 17769 Query 66438 CGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGT 66497 |||| ||||| || || |||||||| ||||| | ||| ||| ||| |||||| || | Sbjct 17770 CGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGAT 17829 Query 66498 CGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGC 66557 ||||||||||||| ||||| |||||||| | ||| || | || ||||| || ||| Sbjct 17830 CGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGC 17889 Query 66558 CATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATAC 66617 | |||||||| | || ||| || || || ||| |||| | || |||||||| | Sbjct 17890 CGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACCAATGC 17949 Query 66618 CACCGGCCGTCTTCGAGATGGCAGCACAA-TCG-GCCACTGTCCGGAATATGCCGTCAAT 66675 |||| ||| |||| ||||| || || || | |||| | | || || ||||| Sbjct 17950 CACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTC--GTAGATACCCTCAAT 18007 Query 66676 GGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGC 66735 ||||| |||| ||| | |||| |||||||| || ||| | || || | || Sbjct 18008 AGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCAGC 18067 Query 66736 CGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTC 66795 |||||| ||||| | ||||| || ||| | | || |||||| ||||| ||||| Sbjct 18068 GTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTC 18127 Query 66796 GATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTG 66855 |||||| || | ||| || || || |||| |||| ||||| | | || || Sbjct 18128 GATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTG 18187 Query 66856 AGGCCGTTCGACCAGC---CGATC---CTTGATATGCATTAAGTAGGAGCGTTCCAGGGT 66909 || | ||| | | | | ||| ||||| || | ||| || | ||||||||| Sbjct 18188 GGGTCTCTCGGCAATCTTGCCATCAAGCTTGA---GC---AGGTATGATCTTTCCAGGGT 18241 Query 66910 CTTGATACCAAAGTACGAGTAATTGAAATCG 66940 ||||| || ||||| ||| ||||| ||| Sbjct 18242 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCG 18272 >seq686 Length=266282 Score = 138 bits (152), Expect = 9e-28 Identities = 209/296 (71%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | |||||| | ||| | Sbjct 149380 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 149321 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | | | | ||| | ||| | | ||||| Sbjct 149320 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGAT-GATGAGAAGTACTTCATCTC 149262 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| ||||| ||||||||||||||||| ||||| | | || || Sbjct 149261 TCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAACGAGAACCTCGTCGAGCG 149202 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | ||||| || || | ||||| || || ||||||||||||||||| || Sbjct 149201 CTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 149142 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 |||||| ||||||| |||| ||| | |||||||| || ||||||| ||||| Sbjct 149141 GGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGC 149086 Score = 125 bits (138), Expect = 6e-24 Identities = 335/503 (67%), Gaps = 13/503 (3%) Strand=Plus/Minus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGT-ACAACGGCTACATTTGGTGAACGAT 61492 ||| || || |||||| | || ||||||| | | | ||| || | || | | || Sbjct 148977 GAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCC-TTCGCCCAGCGTC 148919 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || | || ||||| | || |||||| | || ||||| || | |||||| | ||||||| Sbjct 148918 TGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTT 148859 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| ||||| || ||||| |||||||||||| ||| ||| | || || || | Sbjct 148858 GGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTG 148799 Query 61613 ACGAGGGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATC 61669 ||||||| | || || |||| ||| | ||| || || || || | | | Sbjct 148798 ACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTG-TACTCTCAC-----CTCAAGCACC 148745 Query 61670 GTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAAT 61729 | || || || | | || || | ||| || || | || || ||||| | Sbjct 148744 GCCCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGT 148685 Query 61730 TTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 | || ||||| ||| ||||| | | || |||||||||| | | ||| ||||| Sbjct 148684 TCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGT 148625 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAAT 61848 | ||||| || ||||||||||| || |||||| | |||| | || || |||| || Sbjct 148624 ACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGG-TCTACAAG 148566 Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908 | ||||| || || |||||||| | || || || | |||||||| || || || Sbjct 148565 TCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTT 148506 Query 61909 GAGAAACGTGTAGGCGACTATCA 61931 ||||| ||||| | ||||| || Sbjct 148505 GAGAAGCGTGTCGCTGACTACCA 148483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563498660560