Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq399 89.7 1e-15 seq1530 87.8 3e-15 >seq399 Length=1204 Score = 89.7 bits (98), Expect = 1e-15 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||| ||||||||||||||| | |||||||| | |||||||||||||| Sbjct 1131 GAACGAGACCTTGACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 1190 Query 80 AGGGACTATCGGCT 93 |||||||||||||| Sbjct 1191 AGGGACTATCGGCT 1204 >seq1530 Length=36268 Score = 87.8 bits (96), Expect = 3e-15 Identities = 78/94 (83%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 ||||| ||||| |||| |||| | |||||| | || |||||||||||||||| |||||| Sbjct 22050 AGCCAGCGAGTGCATC--CTTGTCTGGAAGGCC-GGATAATCTTGTTAAACTCGGTCGTG 22106 Query 234 CTGGGGATAGAGCATTGCAATTA-TTGCTCTTCA 266 |||| ||||||||||| | ||| || ||||||| Sbjct 22107 CTGGATATAGAGCATTGTAGTTATTTCCTCTTCA 22140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947184608000