Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq399 89.7 1e-15
seq1530 87.8 3e-15
>seq399
Length=1204
Score = 89.7 bits (98), Expect = 1e-15
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||| ||||||||||||||| | |||||||| | ||||||||||||||
Sbjct 1131 GAACGAGACCTTGACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 1190
Query 80 AGGGACTATCGGCT 93
||||||||||||||
Sbjct 1191 AGGGACTATCGGCT 1204
>seq1530
Length=36268
Score = 87.8 bits (96), Expect = 3e-15
Identities = 78/94 (83%), Gaps = 4/94 (4%)
Strand=Plus/Plus
Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233
||||| ||||| |||| |||| | |||||| | || |||||||||||||||| ||||||
Sbjct 22050 AGCCAGCGAGTGCATC--CTTGTCTGGAAGGCC-GGATAATCTTGTTAAACTCGGTCGTG 22106
Query 234 CTGGGGATAGAGCATTGCAATTA-TTGCTCTTCA 266
|||| ||||||||||| | ||| || |||||||
Sbjct 22107 CTGGATATAGAGCATTGTAGTTATTTCCTCTTCA 22140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947184608000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |