Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2 792 0.0 seq1052 154 5e-35 >seq2 Length=1292 Score = 792 bits (878), Expect = 0.0 Identities = 499/537 (93%), Gaps = 5/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 605 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 546 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 545 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 486 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| || || |||| |||||||||||| Sbjct 485 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 428 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 427 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 371 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 370 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 311 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 251 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 250 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 191 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 190 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 131 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 130 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 74 >seq1052 Length=82584 Score = 154 bits (170), Expect = 5e-35 Identities = 113/130 (87%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||| |||||||| ||| | |||| |||||||||||||||||| Sbjct 47459 CTTTCCCCGCTGATTCTGCCCAGCCCGTTTCCTCAGTTGTGCTTTCGCTAGATAGTAGAT 47518 Query 366 AGGGACAGTGGGAATCTCG-TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 || ||| |||||||||||| || || |||||||||||||| ||||||| |||| ||||| Sbjct 47519 AGAGACCGTGGGAATCTCGTTTGATGCATTCATGCGCGTCGCTAATTAAATGAGAAGGCA 47578 Query 425 TTTGGCTACC 434 ||||||| || Sbjct 47579 TTTGGCTCCC 47588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635173428000