Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq501 246 2e-60 seq933 159 3e-34 >seq501 Length=177797 Score = 246 bits (272), Expect = 2e-60 Identities = 552/823 (67%), Gaps = 6/823 (1%) Strand=Plus/Minus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 |||| | |||||| || || ||||| || ||||| | ||||||||| |||| ||||| | Sbjct 147767 TGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAA 147708 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 || || ||||| || || || || ||||| |||| |||| || || || |||| Sbjct 147707 TGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGC 147648 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | ||| ||||||||||| | |||| | || |||| ||||| ||| | ||| | || Sbjct 147647 GGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGA 147588 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAA 66238 |||| | ||| || | ||||| | || | | | |||| || | ||||||| Sbjct 147587 TGGCATACCAGAGCTTTTGGGCCTTAAGAGT-CTTGCGACCCTTGCCCATCTGTTCGTAC 147529 Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298 | ||||| | | ||||| ||||| | |||| |||| || |||| | Sbjct 147528 TTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTG 147469 Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 || ||||| || | ||| || || | || |||||| | ||| || |||||||| ||| Sbjct 147468 GGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATC 147409 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || || ||| || || || || || ||| || |||| || || || |||| Sbjct 147408 CAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGA 147349 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || | || || |||| ||||| ||||| || || || |||||||| || | || | Sbjct 147348 TCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGA 147289 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || ||| |||||| ||||||||||| ||||| || || |||||||| | ||| || Sbjct 147288 CGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGA 147229 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 |||| ||||| || |||||||||||||| | ||| || || || || || | Sbjct 147228 ACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGG 147169 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTG 66656 || || || |||||||| ||||| ||| |||| ||||| || || || | || Sbjct 147168 TGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTG 147109 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 || | | || || || || ||||| | || ||| | ||| |||| ||| || | Sbjct 147108 TC--GTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCT 147051 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | | || ||| || | || |||||| || || | ||||| || ||| | | || | Sbjct 147050 GTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCG 146991 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819 |||| ||||| ||||||||||| |||| ||| || || Sbjct 146990 ACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACC 146948 Score = 125 bits (138), Expect = 6e-24 Identities = 332/497 (67%), Gaps = 20/497 (4%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | |||||| |||| || | || ||||||||||| ||| Sbjct 148671 TCGACGGTGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTC 148612 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 || || || ||| ||| || ||| ||||| | || | || |||| | | |||| | Sbjct 148611 TTCAGACCGAGC-TTCCAGCCAGCGAAGTGCAT-GCTGGTGATCTTGCCCATAGTCGGGT 148554 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || || | ||||| ||| |||||| | |||||| || ||||||| Sbjct 148553 CCTTCATGTGGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCA 148494 Query 65256 TGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACC 65311 | | ||| | |||| | || || ||||| || |||||||||| | | | ||| Sbjct 148493 TCTGTACAACGGTACGCTG---GGAGATTTCCCAAACAGTCTTGTACA-ATGCCTTCACC 148438 Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371 || | ||||| | |||| ||||| ||||| ||||| || || || | Sbjct 148437 TCGGTAGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCAATGATACGGTTCTTC 148378 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGAT 65427 || | || ||||||| ||||| |||| || | | || ||||| | |||| Sbjct 148377 ATAGCATCGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAGCCAAG----GGTTGAC 148322 Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487 |||||| |||||||| | || |||||||| || |||||||| ||| ||| || || Sbjct 148321 GACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAA 148262 Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 | | ||| ||||||| | || || | || ||||| |||||||| ||||| | || Sbjct 148261 GCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAG 148202 Query 65548 TGAGTTTCGCAATCCGT 65564 ||||| || | |||| Sbjct 148201 AGAGTTGCGGACACCGT 148185 >seq933 Length=137956 Score = 159 bits (176), Expect = 3e-34 Identities = 222/307 (72%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || ||||| |||||||| | |||||| | ||| || Sbjct 10630 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 10689 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 || || ||| || | |||||| | | | | ||| | ||| | | ||||| Sbjct 10690 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAG-GATGAGAAGTACTTCATCTC 10748 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| |||||||| ||||| |||||||||||||| || | || || Sbjct 10749 GCACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCG 10808 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| ||| ||||| |||||| | ||||| || || |||||||||||||||||| | Sbjct 10809 CTTCAGCG-GCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGA 10867 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| || Sbjct 10868 TGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGAGCCGG 10927 Query 61382 CGGAACG 61388 | |||| Sbjct 10928 CCCAACG 10934 Score = 111 bits (122), Expect = 1e-19 Identities = 330/503 (66%), Gaps = 11/503 (2%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||| || || |||||| |||| ||||| | | | | | | | || | | | || || Sbjct 11039 GAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCTCAGCGTTT 11098 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | | || || || | ||||||||| | || |||||||| | || ||| | ||||| || Sbjct 11099 GGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTG 11158 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | ||||| || || || |||||||||||||| ||| ||| ||| | || || || || Sbjct 11159 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCGTGA 11218 Query 61614 CGAGGGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATCG 61670 |||||| |||| || || | ||| | || || || | | || ||| || Sbjct 11219 CGAGGGTCTGCACACCGACTTCGCCTGCCTCCTG-TACTC-----CCACCTCAAGAACCG 11272 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730 || || || | | | || || || || || || | || || ||||| || Sbjct 11273 CCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAGTT 11332 Query 61731 TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTA 61790 ||||| || || | || | | || | |||||||| | || ||| |||||| Sbjct 11333 CCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTA 11392 Query 61791 TATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATA 61849 ||||| || || |||||||| || ||||| | | |||| | || || | || || Sbjct 11393 CATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCTCTTGGCAACGACAAGG-TTTACAAGT 11451 Query 61850 CGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG 61909 | ||||| || || || ||||| | || || |||| ||||||||| || || || | Sbjct 11452 CTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTCTTTG 11511 Query 61910 AGAAACGTGTAGGCGACTATCAA 61932 | || ||||| | |||||| ||| Sbjct 11512 AAAAGCGTGTTGCCGACTACCAA 11534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560126290000