Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq501 246 2e-60
seq933 159 3e-34
>seq501
Length=177797
Score = 246 bits (272), Expect = 2e-60
Identities = 552/823 (67%), Gaps = 6/823 (1%)
Strand=Plus/Minus
Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059
|||| | |||||| || || ||||| || ||||| | ||||||||| |||| ||||| |
Sbjct 147767 TGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAA 147708
Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119
|| || ||||| || || || || ||||| |||| |||| || || || ||||
Sbjct 147707 TGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGC 147648
Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179
| ||| ||||||||||| | |||| | || |||| ||||| ||| | ||| | ||
Sbjct 147647 GGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGA 147588
Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAA 66238
|||| | ||| || | ||||| | || | | | |||| || | |||||||
Sbjct 147587 TGGCATACCAGAGCTTTTGGGCCTTAAGAGT-CTTGCGACCCTTGCCCATCTGTTCGTAC 147529
Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298
| ||||| | | ||||| ||||| | |||| |||| || |||| |
Sbjct 147528 TTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTG 147469
Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358
|| ||||| || | ||| || || | || |||||| | ||| || |||||||| |||
Sbjct 147468 GGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATC 147409
Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418
|| || || ||| || || || || || ||| || |||| || || || ||||
Sbjct 147408 CAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGA 147349
Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478
|| | || || |||| ||||| ||||| || || || |||||||| || | || |
Sbjct 147348 TCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGA 147289
Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538
|| ||| |||||| ||||||||||| ||||| || || |||||||| | ||| ||
Sbjct 147288 CGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGA 147229
Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598
|||| ||||| || |||||||||||||| | ||| || || || || || |
Sbjct 147228 ACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGG 147169
Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTG 66656
|| || || |||||||| ||||| ||| |||| ||||| || || || | ||
Sbjct 147168 TGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTG 147109
Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716
|| | | || || || || ||||| | || ||| | ||| |||| ||| || |
Sbjct 147108 TC--GTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCT 147051
Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776
| | || ||| || | || |||||| || || | ||||| || ||| | | || |
Sbjct 147050 GTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCG 146991
Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819
|||| ||||| ||||||||||| |||| ||| || ||
Sbjct 146990 ACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACC 146948
Score = 125 bits (138), Expect = 6e-24
Identities = 332/497 (67%), Gaps = 20/497 (4%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
||||| |||||||| || | |||||| |||| || | || ||||||||||| |||
Sbjct 148671 TCGACGGTGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTC 148612
Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195
|| || || ||| ||| || ||| ||||| | || | || |||| | | |||| |
Sbjct 148611 TTCAGACCGAGC-TTCCAGCCAGCGAAGTGCAT-GCTGGTGATCTTGCCCATAGTCGGGT 148554
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || || || || | ||||| ||| |||||| | |||||| || |||||||
Sbjct 148553 CCTTCATGTGGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCA 148494
Query 65256 TGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACC 65311
| | ||| | |||| | || || ||||| || |||||||||| | | | |||
Sbjct 148493 TCTGTACAACGGTACGCTG---GGAGATTTCCCAAACAGTCTTGTACA-ATGCCTTCACC 148438
Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371
|| | ||||| | |||| ||||| ||||| ||||| || || || |
Sbjct 148437 TCGGTAGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCAATGATACGGTTCTTC 148378
Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGAT 65427
|| | || ||||||| ||||| |||| || | | || ||||| | ||||
Sbjct 148377 ATAGCATCGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAGCCAAG----GGTTGAC 148322
Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487
|||||| |||||||| | || |||||||| || |||||||| ||| ||| || ||
Sbjct 148321 GACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAA 148262
Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547
| | ||| ||||||| | || || | || ||||| |||||||| ||||| | ||
Sbjct 148261 GCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAG 148202
Query 65548 TGAGTTTCGCAATCCGT 65564
||||| || | ||||
Sbjct 148201 AGAGTTGCGGACACCGT 148185
>seq933
Length=137956
Score = 159 bits (176), Expect = 3e-34
Identities = 222/307 (72%), Gaps = 7/307 (2%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || ||||| |||||||| | |||||| | ||| ||
Sbjct 10630 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 10689
Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202
|| || ||| || | |||||| | | | | ||| | ||| | | |||||
Sbjct 10690 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAG-GATGAGAAGTACTTCATCTC 10748
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | | || ||||| |||||||| ||||| |||||||||||||| || | || ||
Sbjct 10749 GCACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCG 10808
Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| ||| ||||| |||||| | ||||| || || |||||||||||||||||| |
Sbjct 10809 CTTCAGCG-GCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGA 10867
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
||||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| ||
Sbjct 10868 TGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGAGCCGG 10927
Query 61382 CGGAACG 61388
| ||||
Sbjct 10928 CCCAACG 10934
Score = 111 bits (122), Expect = 1e-19
Identities = 330/503 (66%), Gaps = 11/503 (2%)
Strand=Plus/Plus
Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493
||| || || |||||| |||| ||||| | | | | | | | || | | | || ||
Sbjct 11039 GAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCTCAGCGTTT 11098
Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553
| | || || || | ||||||||| | || |||||||| | || ||| | ||||| ||
Sbjct 11099 GGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTG 11158
Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613
| | ||||| || || || |||||||||||||| ||| ||| ||| | || || || ||
Sbjct 11159 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCGTGA 11218
Query 61614 CGAGGGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATCG 61670
|||||| |||| || || | ||| | || || || | | || ||| ||
Sbjct 11219 CGAGGGTCTGCACACCGACTTCGCCTGCCTCCTG-TACTC-----CCACCTCAAGAACCG 11272
Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730
|| || || | | | || || || || || || | || || ||||| ||
Sbjct 11273 CCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAGTT 11332
Query 61731 TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTA 61790
||||| || || | || | | || | |||||||| | || ||| ||||||
Sbjct 11333 CCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTA 11392
Query 61791 TATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATA 61849
||||| || || |||||||| || ||||| | | |||| | || || | || ||
Sbjct 11393 CATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCTCTTGGCAACGACAAGG-TTTACAAGT 11451
Query 61850 CGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG 61909
| ||||| || || || ||||| | || || |||| ||||||||| || || || |
Sbjct 11452 CTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTCTTTG 11511
Query 61910 AGAAACGTGTAGGCGACTATCAA 61932
| || ||||| | |||||| |||
Sbjct 11512 AAAAGCGTGTTGCCGACTACCAA 11534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397560126290000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |