Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq1180 104 9e-17 >seq1180 Length=32876 Score = 104 bits (114), Expect = 9e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||||||||| ||||||| | | || || || |||||||||||| ||||| | Sbjct 18911 CAATGGTCATACGAGACGGAATGGCGTGGGGATTAATAATGATGTCAGGCGTGATGCCCT 18852 Query 364485 CAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCAT 364544 | ||||| ||||||||||| || | || | | | |||||| || ||||| || | | Sbjct 18851 CGGCGGTGAAGGGCATATCCTCCTGTCGATAGGTAACACCAATAGTACCCTTCTGACCGT 18792 Query 364545 AGCGAGAAGCAAACTTGTCGCCAAT 364569 || || || |||||||||||||| Sbjct 18791 GACGCGACGCGAACTTGTCGCCAAT 18767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884847156076125