Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq441 250 4e-64 seq207 118 2e-24 seq367 109 8e-22 >seq441 Length=6970 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| || | |||||| ||||||||| || ||||||| ||| | Sbjct 2735 GTACAAAGGGCAGGGACGTAATCGGCACGAGCT-GATGACTCGTGCCTACTAGGCATT-C 2792 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| ||| | |||||| Sbjct 2793 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGGGTTTAACAAGATT 2852 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||||||||||||| ||||| || ||||||||||||||||||| Sbjct 2853 ACCCAGACCTCTCGGCCAAGGTGATGTACTCGCTGGCCCTGTCAGTGTAGCGCGCGTGCG 2912 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 2913 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCGCGCACTTCC 2961 >seq207 Length=60267 Score = 118 bits (130), Expect = 2e-24 Identities = 166/228 (73%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||| ||||||||| | ||| | |||| || ||| |||||||||| ||| | Sbjct 55860 GTATAAAGGGTAGGGACGTAATTAACACAAGCTA-ATAACTTATGCTTACTAGGGATT-C 55803 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || || |||| || |||| ||| |||||||||| ||| || | ||| | |||||| Sbjct 55802 CTTATTAAAGAGTAATAATTATAATACTCTATCCCCAACACAATAGAGTTTAACAAGATT 55743 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| || |||| || || | | || ||| || ||| ||| || Sbjct 55742 ACCTAGGCCTTCTAGCTAAGGGAGTA--CTTACTAGCTCTATTAGTATAACGCACGTACG 55685 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 ||| |||| |||||||||||| |||||||| ||||| ||||||||||| Sbjct 55684 GCCTAGAATATCTAAGGGCATTACAGACCTATTATTACCTCAAACTTC 55637 Score = 96.9 bits (106), Expect = 5e-18 Identities = 161/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||| ||||| ||| | || | |||| || ||| |||||||||| ||| | Sbjct 28848 GTATAAAGGGTAGGGATGTAATTAATACAAGCTA-ATAACTTATGCTTACTAGGGATT-C 28791 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || || |||| || |||| ||| |||||||| | | || | ||| | |||||| Sbjct 28790 CTTATTAAAGAGTAATAATTATAATACTCTATCCCTAGTATAATAGAGTTTAATAAGATT 28731 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| || |||| || || | | || ||| || |||||||||| Sbjct 28730 ACCTAGGCCTTCTAGCTAAGGGAGTA--CTTACTAGCTCTATTAGTATAACGCGCGTGCG 28673 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 ||| |||| ||||||||| || | |||||| ||||||||| ||||||| Sbjct 28672 GCCTAGAATATCTAAGGGTATTATAGACCTATTATTGCCTTAAACTTC 28625 >seq367 Length=12900 Score = 109 bits (120), Expect = 8e-22 Identities = 107/137 (78%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 77 AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCC 136 || ||||||| |||||||||| ||||| | || ||||||||||| ||| ||||| Sbjct 6152 AACTGCAATGCTCTATCCCCAGCACGACGGCGTT----AGATTACCCGGGCCTTCCGGCC 6207 Query 137 AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196 |||| || |||| | | | |||| || ||||||||||||| |||||||| |||| Sbjct 6208 AAGGGAGTA--CTCGCTTGCTCCGCCAGTATAACGCGCGTGCGGCCTAGAACATCCAAGG 6265 Query 197 GCATCACAGACCTGTTA 213 ||||||||||||||||| Sbjct 6266 GCATCACAGACCTGTTA 6282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751996007820