Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq441 486 3e-135 seq207 320 3e-85 >seq441 Length=6970 Score = 486 bits (538), Expect = 3e-135 Identities = 297/314 (95%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||||||||| ||||||||||||||||||| || |||| |||||||||| |||| ||||| Sbjct 3691 TGGTCCGGCTGGGCCTTTCCTTCTGGGGAACCTCATGGCCTTCACTGGCTGTGG-GGGGA 3633 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3632 ACCAGGACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 3573 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3572 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 3513 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 3512 AATGATTAATAGGGATAGTCGGGGGCGTCAGTATTCAGCTGTCAGAGGTGAAATTCTTGG 3453 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| || Sbjct 3452 ATTTGCTGAAGACTAACTACTGCGAAAGCATTCGCCAAGGATGTTTTCATTAATCAGGGA 3393 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 3392 ACGAAAGTTAGGGG 3379 >seq207 Length=60267 Score = 320 bits (354), Expect = 3e-85 Identities = 260/314 (83%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||||| ||| |||||||||| ||| ||| | |||||||||| ||| ||| ||| |||| Sbjct 46128 TGGTCTGGCTGGGCCTTTCCCTCTATGGAACTGCATGCCCTTTACTAGGTATGCTAGGGA 46187 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||||||||||||||||||||||||||| | | | |||||| | || |||| || Sbjct 46188 AGTAGGACTTTTACTTTGAAAAAATTAGAGTGCTTTAGGTAGGCCTATACTTAAATATAT 46247 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||| || |||||||||||||||||||| |||||||||||||||||| |||||| || || Sbjct 46248 TAGTATAGAATAATAGAATAGGACGTGTAGTTCTATTTTGTTGGTTTTTAGGACTGCTGT 46307 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||||| |||| | |||||| |||| | ||| || |||||||| | Sbjct 46308 AATGATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAAGTAAAATTCTTAG 46367 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||| ||||||||||||| ||||||| || || ||||||||||| ||| || || || Sbjct 46368 ATTTATTAAAGACTAACTACTACGAAAGCATTTACTAAGGATGTTTTTATTTATTAG-GA 46426 Query 305 ACGAAAGTTAGGGG 318 | ||||||||||| Sbjct 46427 ATAAAAGTTAGGGG 46440 Score = 320 bits (354), Expect = 3e-85 Identities = 256/307 (83%), Gaps = 1/307 (0%) Strand=Plus/Plus Query 12 GCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA 71 ||||||||||||| |||| ||| | |||||||||| ||||||||||| |||| |||| Sbjct 54912 GCCGGGCCTTTCCCTCTGCGGAACTGCATGCCCTTTACTGGGTGTGCTAGGGAAGTAGGA 54971 Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATG 131 |||||||||| |||||||||||||| || | | |||||| | || |||| |||||||| Sbjct 54972 CTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAGGCCTATACTTAAATATATTAGCATA 55031 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||||||||| |||||| |||||||||| || |||| |||||| | ||||| ||| Sbjct 55032 GAATAATAGAATAAGACGTGTAGTTCTATTTTATTAGTTTTTAGGACTACTGTAATAATT 55091 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||||||||||| ||||| | |||||| |||| | ||||||||||||||| |||||||| Sbjct 55092 AATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTCTTAGATTTATT 55151 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||||||||||| ||||| || || ||||||||||| ||| || || |||| |||| Sbjct 55152 AAAGACTAACTACTATGAAAGTATTTACTAAGGATGTTTTTATTTATTAG-GAACAAAAG 55210 Query 312 TTAGGGG 318 ||||||| Sbjct 55211 TTAGGGG 55217 Score = 307 bits (340), Expect = 2e-81 Identities = 256/312 (82%), Gaps = 1/312 (0%) Strand=Plus/Plus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66 ||| |||| ||||||||| ||| ||| | ||||||||| ||| ||| | | |||| Sbjct 27895 GTCTGGCCAGGCCTTTCCCTCTACGGAACTACATGCCCTTTACTAGGTATACTAGGGAAG 27954 Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126 ||||||||||||||| |||||||||||||| || | |||||||| | ||| ||||||||| Sbjct 27955 CAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAGGCCTATACTCAAATACATTA 28014 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 |||| ||||||||||||||||||| |||||||||| || |||||||||||| || ||| Sbjct 28015 GCATAGAATAATAGAATAGGACGTATAGTTCTATTTTATTAGTTTCTAGGACCACCATAA 28074 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 | ||||||||||||||| |||| | |||||| |||| | |||||| |||||||| ||| Sbjct 28075 TAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTCTTAGAT 28134 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 ||||| ||||||||||||| |||| || || ||||||||||| ||| || || ||| Sbjct 28135 TTATTAAAGACTAACTACTATAAAAGTATTTACTAAGGATGTTTTTATTTATTAG-GAAT 28193 Query 307 GAAAGTTAGGGG 318 ||||||||||| Sbjct 28194 AAAAGTTAGGGG 28205 Score = 284 bits (314), Expect = 2e-74 Identities = 251/312 (80%), Gaps = 1/312 (0%) Strand=Plus/Plus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66 ||| |||||||||||||| ||| ||| | || ||||| ||| ||| ||| |||| Sbjct 36644 GTCTGGCCGGGCCTTTCCCTCTACGGAACTATATACCCTTTACTAGGTATGCTAGGGAAG 36703 Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126 ||||||||||||||| ||||| ||||||| || | |||||||| | || |||| |||| Sbjct 36704 CAGGACTTTTACTTTAAAAAATTTAGAGTACTCTAGGCAGGCCTATACTTAAATATATTA 36763 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 |||| |||||||||||||||||| | |||||||||| || ||||||||||| | ||| Sbjct 36764 GCATAGAATAATAGAATAGGACGCGTAGTTCTATTTTATTAGTTTCTAGGACTACTATAA 36823 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 | ||||||||||||||| |||| | |||||| |||| | |||||| |||||||| ||| Sbjct 36824 TAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTCTTAGAT 36883 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 ||||| ||||||||||||| |||| || || ||||||||||| ||| || || |||| Sbjct 36884 TTATTAAAGACTAACTACTATAAAAGTATTTACTAAGGATGTTTTTATTTATTAG-GAAC 36942 Query 307 GAAAGTTAGGGG 318 ||||||||||| Sbjct 36943 AAAAGTTAGGGG 36954 Score = 280 bits (310), Expect = 3e-73 Identities = 250/312 (80%), Gaps = 1/312 (0%) Strand=Plus/Plus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66 |||||||| ||||||||| ||| || ||| ||||| ||| ||||| | |||| Sbjct 8169 GTCCGGCCAGGCCTTTCCCTCTATAGAAGTACATACCCTTTACTAGGTGTACTAGGGAAG 8228 Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126 |||||||||||||| ||||||||||||| | | | |||||| | || ||||||||| Sbjct 8229 TAGGACTTTTACTTTAAAAAAATTAGAGTACTTTAGGTAGGCCTATACTTAAATACATTA 8288 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 |||| |||||||||||||||||||| |||||||||| || ||||||| ||| | ||| Sbjct 8289 GCATAGAATAATAGAATAGGACGTGTAGTTCTATTTTATTAGTTTCTAAGACTACTATAA 8348 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 | ||||||||||||||| ||||| | |||||| |||| | |||||| |||||||| ||| Sbjct 8349 TAATTAATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGAT 8408 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 ||||| ||||||||||||| |||| || || ||||||||||| ||| || || |||| Sbjct 8409 TTATTAAAGACTAACTACTATAAAAGTATTTACTAAGGATGTTTTTATTTATTAG-GAAC 8467 Query 307 GAAAGTTAGGGG 318 ||||||||||| Sbjct 8468 AAAAGTTAGGGG 8479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915194984704