Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq441 486 3e-135
seq207 320 3e-85
>seq441
Length=6970
Score = 486 bits (538), Expect = 3e-135
Identities = 297/314 (95%), Gaps = 1/314 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
||||||||| ||||||||||||||||||| || |||| |||||||||| |||| |||||
Sbjct 3691 TGGTCCGGCTGGGCCTTTCCTTCTGGGGAACCTCATGGCCTTCACTGGCTGTGG-GGGGA 3633
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3632 ACCAGGACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 3573
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3572 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 3513
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 3512 AATGATTAATAGGGATAGTCGGGGGCGTCAGTATTCAGCTGTCAGAGGTGAAATTCTTGG 3453
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
|||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 3452 ATTTGCTGAAGACTAACTACTGCGAAAGCATTCGCCAAGGATGTTTTCATTAATCAGGGA 3393
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 3392 ACGAAAGTTAGGGG 3379
>seq207
Length=60267
Score = 320 bits (354), Expect = 3e-85
Identities = 260/314 (83%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
||||| ||| |||||||||| ||| ||| | |||||||||| ||| ||| ||| ||||
Sbjct 46128 TGGTCTGGCTGGGCCTTTCCCTCTATGGAACTGCATGCCCTTTACTAGGTATGCTAGGGA 46187
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
||||||||||||||||||||||||||||| | | | |||||| | || |||| ||
Sbjct 46188 AGTAGGACTTTTACTTTGAAAAAATTAGAGTGCTTTAGGTAGGCCTATACTTAAATATAT 46247
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||| || |||||||||||||||||||| |||||||||||||||||| |||||| || ||
Sbjct 46248 TAGTATAGAATAATAGAATAGGACGTGTAGTTCTATTTTGTTGGTTTTTAGGACTGCTGT 46307
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||||||| |||| | |||||| |||| | ||| || |||||||| |
Sbjct 46308 AATGATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAAGTAAAATTCTTAG 46367
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||| ||||||||||||| ||||||| || || ||||||||||| ||| || || ||
Sbjct 46368 ATTTATTAAAGACTAACTACTACGAAAGCATTTACTAAGGATGTTTTTATTTATTAG-GA 46426
Query 305 ACGAAAGTTAGGGG 318
| |||||||||||
Sbjct 46427 ATAAAAGTTAGGGG 46440
Score = 320 bits (354), Expect = 3e-85
Identities = 256/307 (83%), Gaps = 1/307 (0%)
Strand=Plus/Plus
Query 12 GCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA 71
||||||||||||| |||| ||| | |||||||||| ||||||||||| |||| ||||
Sbjct 54912 GCCGGGCCTTTCCCTCTGCGGAACTGCATGCCCTTTACTGGGTGTGCTAGGGAAGTAGGA 54971
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATG 131
|||||||||| |||||||||||||| || | | |||||| | || |||| ||||||||
Sbjct 54972 CTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAGGCCTATACTTAAATATATTAGCATA 55031
Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191
||||||||||||| |||||| |||||||||| || |||| |||||| | ||||| |||
Sbjct 55032 GAATAATAGAATAAGACGTGTAGTTCTATTTTATTAGTTTTTAGGACTACTGTAATAATT 55091
Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251
|||||||||||| ||||| | |||||| |||| | ||||||||||||||| ||||||||
Sbjct 55092 AATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTCTTAGATTTATT 55151
Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311
||||||||||||| ||||| || || ||||||||||| ||| || || |||| ||||
Sbjct 55152 AAAGACTAACTACTATGAAAGTATTTACTAAGGATGTTTTTATTTATTAG-GAACAAAAG 55210
Query 312 TTAGGGG 318
|||||||
Sbjct 55211 TTAGGGG 55217
Score = 307 bits (340), Expect = 2e-81
Identities = 256/312 (82%), Gaps = 1/312 (0%)
Strand=Plus/Plus
Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66
||| |||| ||||||||| ||| ||| | ||||||||| ||| ||| | | ||||
Sbjct 27895 GTCTGGCCAGGCCTTTCCCTCTACGGAACTACATGCCCTTTACTAGGTATACTAGGGAAG 27954
Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126
||||||||||||||| |||||||||||||| || | |||||||| | ||| |||||||||
Sbjct 27955 CAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAGGCCTATACTCAAATACATTA 28014
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186
|||| ||||||||||||||||||| |||||||||| || |||||||||||| || |||
Sbjct 28015 GCATAGAATAATAGAATAGGACGTATAGTTCTATTTTATTAGTTTCTAGGACCACCATAA 28074
Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246
| ||||||||||||||| |||| | |||||| |||| | |||||| |||||||| |||
Sbjct 28075 TAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTCTTAGAT 28134
Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306
||||| ||||||||||||| |||| || || ||||||||||| ||| || || |||
Sbjct 28135 TTATTAAAGACTAACTACTATAAAAGTATTTACTAAGGATGTTTTTATTTATTAG-GAAT 28193
Query 307 GAAAGTTAGGGG 318
|||||||||||
Sbjct 28194 AAAAGTTAGGGG 28205
Score = 284 bits (314), Expect = 2e-74
Identities = 251/312 (80%), Gaps = 1/312 (0%)
Strand=Plus/Plus
Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66
||| |||||||||||||| ||| ||| | || ||||| ||| ||| ||| ||||
Sbjct 36644 GTCTGGCCGGGCCTTTCCCTCTACGGAACTATATACCCTTTACTAGGTATGCTAGGGAAG 36703
Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126
||||||||||||||| ||||| ||||||| || | |||||||| | || |||| ||||
Sbjct 36704 CAGGACTTTTACTTTAAAAAATTTAGAGTACTCTAGGCAGGCCTATACTTAAATATATTA 36763
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186
|||| |||||||||||||||||| | |||||||||| || ||||||||||| | |||
Sbjct 36764 GCATAGAATAATAGAATAGGACGCGTAGTTCTATTTTATTAGTTTCTAGGACTACTATAA 36823
Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246
| ||||||||||||||| |||| | |||||| |||| | |||||| |||||||| |||
Sbjct 36824 TAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTCTTAGAT 36883
Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306
||||| ||||||||||||| |||| || || ||||||||||| ||| || || ||||
Sbjct 36884 TTATTAAAGACTAACTACTATAAAAGTATTTACTAAGGATGTTTTTATTTATTAG-GAAC 36942
Query 307 GAAAGTTAGGGG 318
|||||||||||
Sbjct 36943 AAAAGTTAGGGG 36954
Score = 280 bits (310), Expect = 3e-73
Identities = 250/312 (80%), Gaps = 1/312 (0%)
Strand=Plus/Plus
Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66
|||||||| ||||||||| ||| || ||| ||||| ||| ||||| | ||||
Sbjct 8169 GTCCGGCCAGGCCTTTCCCTCTATAGAAGTACATACCCTTTACTAGGTGTACTAGGGAAG 8228
Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126
|||||||||||||| ||||||||||||| | | | |||||| | || |||||||||
Sbjct 8229 TAGGACTTTTACTTTAAAAAAATTAGAGTACTTTAGGTAGGCCTATACTTAAATACATTA 8288
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186
|||| |||||||||||||||||||| |||||||||| || ||||||| ||| | |||
Sbjct 8289 GCATAGAATAATAGAATAGGACGTGTAGTTCTATTTTATTAGTTTCTAAGACTACTATAA 8348
Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246
| ||||||||||||||| ||||| | |||||| |||| | |||||| |||||||| |||
Sbjct 8349 TAATTAATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGAT 8408
Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306
||||| ||||||||||||| |||| || || ||||||||||| ||| || || ||||
Sbjct 8409 TTATTAAAGACTAACTACTATAAAAGTATTTACTAAGGATGTTTTTATTTATTAG-GAAC 8467
Query 307 GAAAGTTAGGGG 318
|||||||||||
Sbjct 8468 AAAAGTTAGGGG 8479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915194984704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |