Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq276 140 8e-31
>seq276
Length=27860
Score = 140 bits (154), Expect = 8e-31
Identities = 200/278 (72%), Gaps = 9/278 (3%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| || | |||| ||| || ||| ||||||||||||| | | |||||||| |
Sbjct 23459 TAAACAGTATCTGCACTGCTATTCCAATTTCACTGAGACAATCATCGAGACAGCTGTTGC 23400
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| | ||||| |||||| | | | ||| | | ||||| |||||||||||||||||
Sbjct 23399 ATCGTTAAGTCATTCATGCAGGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGA 23340
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
|| | || | || ||||||| || | ||||| || |||| | || |||| ||||
Sbjct 23339 CCCTCATAGGTAAGGCCGCCATTAATCGGGGTGTCCTTCAAAACCT--CAGTTA-ATAAC 23283
Query 187 C-----CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTT 240
| || ||| || ||| || ||||||| | |||||| | |||| | | ||
Sbjct 23282 CAAGGAAAATTCGTTACCCAGCCGACATCGGGCAGACATCACACTCAATACTTTGATTTT 23223
Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
| | |||||||||||||||||||||| ||||||||||
Sbjct 23222 TTATCTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCG 23185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260793090816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |