Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq441 297 3e-78
seq207 219 7e-55
seq118 150 3e-34
seq367 114 2e-23
>seq441
Length=6970
Score = 297 bits (328), Expect = 3e-78
Identities = 222/258 (86%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2879 TACTCGCTGGCCCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 2938
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||| | |||||||| |||| || ||| |||||||| |||||||||||||
Sbjct 2939 ACCTGTTATTGCCGCGCACTTCCATCGGCTTGA-GCCGATAGTCCCCCTAAGAAGCCAGC 2997
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
|| | | || |||||||||| || |||||||||||||||||| |||||
Sbjct 2998 GGCCCGCAGATGCGGACCGGGCTATTTAAG-GGCCGAGGTCTCGTTCGTTATCGCAATTA 3056
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 3057 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCATCCAAAAGATCAAGA 3116
Query 241 AAGAGCTATCAATCTGTC 258
||||||| ||||||||||
Sbjct 3117 AAGAGCTCTCAATCTGTC 3134
>seq207
Length=60267
Score = 219 bits (242), Expect = 7e-55
Identities = 199/247 (81%), Gaps = 3/247 (1%)
Strand=Plus/Minus
Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69
|||| | ||| || ||| ||| ||||| |||| |||||||||||| |||||||| ||||
Sbjct 55709 GCTCTATTAGTATAACGCACGTACGGCCTAGAATATCTAAGGGCATTACAGACCTATTAT 55650
Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129
| ||||||||||| ||| ||| |||| ||||||||||||||||||| ||| | || |
Sbjct 55649 TACCTCAAACTTCTATTAGCTT-AAGCTAATAGTCCCTCTAAGAAGCTAGCATACTACTA 55591
Query 130 TAGTCGATGG-GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
|| | || |||||||||| |||||||||||||||| |||| |||||| ||||||
Sbjct 55590 AAG-CAATACAGGCTATTTAGTAGGTTAAGGTCTCGTTTATTATTACAATTAAGCAGACA 55532
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248
||| |||||||||||||||||| || || || || ||| ||| ||| |||||||||||
Sbjct 55531 AATTACTCCACCAACTAAGAACAGCTATATACTACTACCTATAAAATTAAGAAAGAGCTC 55472
Query 249 TCAATCT 255
| |||||
Sbjct 55471 TTAATCT 55465
Score = 205 bits (226), Expect = 1e-50
Identities = 199/255 (78%), Gaps = 1/255 (0%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
||||| | |||| | ||| || |||| || |||| |||| ||||||||| || | ||
Sbjct 46941 TACTCACTAGCTCTATTAGTATAACGCGTGTATGGCCTAGAATATCTAAGGGTATTATAG 46882
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||| ||| ||||||| ||| ||| |||| |||||||||||||||||||| ||
Sbjct 46881 ACCTATTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAGTCCCTCTAAGAAGCCGGC 46823
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| || | ||| |||||||||| |||||||||||| || ||||| |||||
Sbjct 46822 ATACTACTAAAGTAATATAGGCTATTTAGTAGGTTAAGGTCTTATTTGTTATTACAATTA 46763
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||||| |||| ||||||||||||| || || ||| || ||| ||| ||||||||
Sbjct 46762 AGCAGACAAATTACTCTACCAACTAAGAACAGCTATACACTACTACCTATAAAATCAAGA 46703
Query 241 AAGAGCTATCAATCT 255
||||||| | |||||
Sbjct 46702 AAGAGCTCTTAATCT 46688
Score = 201 bits (222), Expect = 2e-49
Identities = 193/246 (78%), Gaps = 1/246 (0%)
Strand=Plus/Minus
Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69
|||| | ||| || ||||||||||||| |||| ||||||||| || | |||||| ||||
Sbjct 28697 GCTCTATTAGTATAACGCGCGTGCGGCCTAGAATATCTAAGGGTATTATAGACCTATTAT 28638
Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129
||||| ||||||| ||| ||| |||| ||||||||||||||||||| || | || |
Sbjct 28637 TGCCTTAAACTTCTATTAGCTT-AAGCTAATAGTCCCTCTAAGAAGCTAGTATACTACTA 28579
Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189
||| |||||||||| |||||||||||| || |||||| |||||| |||||||
Sbjct 28578 AAGTAATATAGGCTATTTAGTAGGTTAAGGTCTTATTTGTTATCACAATTAAGCAGACAA 28519
Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249
|| |||| || ||||||||| || || || || ||| ||| ||| ||||||||||| |
Sbjct 28518 ATTACTCTACTAACTAAGAATAGCTATATACTACTACCTATAAAATTAAGAAAGAGCTCT 28459
Query 250 CAATCT 255
|||||
Sbjct 28458 TAATCT 28453
Score = 179 bits (198), Expect = 6e-43
Identities = 188/246 (76%), Gaps = 1/246 (0%)
Strand=Plus/Minus
Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69
|||| | ||| || | ||| || ||| |||| ||||||||| || | |||||| ||||
Sbjct 37446 GCTCTATTAGTATAACACGCATGTAGCCTAGAATATCTAAGGGTATTATAGACCTATTAT 37387
Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129
||||| ||||||| ||| | | |||| |||||||||||||| |||| ||| | || |
Sbjct 37386 TGCCTTAAACTTCTATTAGTTT-AAGCTAATAGTCCCTCTAAAAAGCTAGCGTACTACTA 37328
Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189
||| |||||||||| |||||||||||| || ||||| |||||| ||| ||
Sbjct 37327 AAGTAATATAGGCTATTTAGTAGGTTAAGGTCTTATTTGTTATTACAATTAAGTAGATAA 37268
Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249
|| |||| || ||||||||||||| || ||| || ||| ||| ||| ||||||||||| |
Sbjct 37267 ATTACTCTACTAACTAAGAACGGCTATACACTACTACCTATAAAATTAAGAAAGAGCTCT 37208
Query 250 CAATCT 255
|||||
Sbjct 37207 TAATCT 37202
Score = 159 bits (176), Expect = 6e-37
Identities = 173/228 (76%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 28 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTG 87
|||| |||| |||| ||||||||| || | |||||| ||||| ||| ||||||| |||
Sbjct 8953 GCGTATGGCCTAGAATATCTAAGGGTATTATAGACCTATTATTACCTTAAACTTCTATTA 8894
Query 88 GCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTT 147
||| |||| ||||||||||||||||||| ||| | || | ||| ||||||||
Sbjct 8893 GCTT-AAGCTAATAGTCCCTCTAAGAAGCTAGCGTACTACTAAAGTAATATAGGCTATTT 8835
Query 148 AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 207
|| |||||||||||| || |||| |||||| ||| |||| |||| || |||||||
Sbjct 8834 AGTAGGTTAAGGTCTTATTTATTATTATAATTAAGTAGATAAATTACTCTACTAACTAAG 8775
Query 208 AACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255
|| || || || || || ||| ||| ||||||||||| | |||||
Sbjct 8774 AATAGCTATATACTACTACTTATAAAATTAAGAAAGAGCTCTTAATCT 8727
>seq118
Length=165338
Score = 150 bits (166), Expect = 3e-34
Identities = 168/223 (75%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 35 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAA 94
||| |||| ||||||||| || |||||||| ||||| ||| ||||||| ||| | | ||
Sbjct 118985 GCCTAGAATATCTAAGGGTATTACAGACCTATTATTACCTTAAACTTCTATTAGGTT-AA 119043
Query 95 GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGT 154
|| ||||||||||||||||||| | | | || | ||| || | ||||||||||
Sbjct 119044 GCTAATAGTCCCTCTAAGAAGCTAACGTACTACTAAAGTAAGACAGGATGTTTAGCAGGT 119103
Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214
|||||||| || ||| | ||| || ||| |||| |||| || ||||||||| ||
Sbjct 119104 TAAGGTCTTATTTGTTGTTATAATGAAGTAGATAAATTACTCTACTAACTAAGAATAGCT 119163
Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
|| || || ||| ||| ||| ||||||||||| | |||||||
Sbjct 119164 ATATACTACTACCTATAAAATTAAGAAAGAGCTCTTAATCTGT 119206
>seq367
Length=12900
Score = 114 bits (126), Expect = 2e-23
Identities = 99/121 (82%), Gaps = 5/121 (4%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| | |||||| |||| || ||||||||||||| |||||||| |||||||||||||
Sbjct 6215 TACTCGCTTGCTCCGCCAGTATAACGCGCGTGCGGCCTAGAACATCCAAGGGCATCACAG 6274
Query 61 ACCT----GTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116
|||| ||||| ||| ||||| ||| |||| | |||| ||||||||||| |||| |
Sbjct 6275 ACCTGTTAGTTATGAACTCGAACTTGCATCGGCTTG-AGCCGATAGTCCCTCTCAGAATC 6333
Query 117 C 117
|
Sbjct 6334 C 6334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796795769988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |