Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq441 297 3e-78 seq207 219 7e-55 seq118 150 3e-34 seq367 114 2e-23 >seq441 Length=6970 Score = 297 bits (328), Expect = 3e-78 Identities = 222/258 (86%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2879 TACTCGCTGGCCCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 2938 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||| | |||||||| |||| || ||| |||||||| ||||||||||||| Sbjct 2939 ACCTGTTATTGCCGCGCACTTCCATCGGCTTGA-GCCGATAGTCCCCCTAAGAAGCCAGC 2997 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 || | | || |||||||||| || |||||||||||||||||| ||||| Sbjct 2998 GGCCCGCAGATGCGGACCGGGCTATTTAAG-GGCCGAGGTCTCGTTCGTTATCGCAATTA 3056 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 3057 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCATCCAAAAGATCAAGA 3116 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 3117 AAGAGCTCTCAATCTGTC 3134 >seq207 Length=60267 Score = 219 bits (242), Expect = 7e-55 Identities = 199/247 (81%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 |||| | ||| || ||| ||| ||||| |||| |||||||||||| |||||||| |||| Sbjct 55709 GCTCTATTAGTATAACGCACGTACGGCCTAGAATATCTAAGGGCATTACAGACCTATTAT 55650 Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129 | ||||||||||| ||| ||| |||| ||||||||||||||||||| ||| | || | Sbjct 55649 TACCTCAAACTTCTATTAGCTT-AAGCTAATAGTCCCTCTAAGAAGCTAGCATACTACTA 55591 Query 130 TAGTCGATGG-GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || |||||||||| |||||||||||||||| |||| |||||| |||||| Sbjct 55590 AAG-CAATACAGGCTATTTAGTAGGTTAAGGTCTCGTTTATTATTACAATTAAGCAGACA 55532 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||| |||||||||||||||||| || || || || ||| ||| ||| ||||||||||| Sbjct 55531 AATTACTCCACCAACTAAGAACAGCTATATACTACTACCTATAAAATTAAGAAAGAGCTC 55472 Query 249 TCAATCT 255 | ||||| Sbjct 55471 TTAATCT 55465 Score = 205 bits (226), Expect = 1e-50 Identities = 199/255 (78%), Gaps = 1/255 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| | |||| | ||| || |||| || |||| |||| ||||||||| || | || Sbjct 46941 TACTCACTAGCTCTATTAGTATAACGCGTGTATGGCCTAGAATATCTAAGGGTATTATAG 46882 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| ||| ||||||| ||| ||| |||| |||||||||||||||||||| || Sbjct 46881 ACCTATTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAGTCCCTCTAAGAAGCCGGC 46823 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || | ||| |||||||||| |||||||||||| || ||||| ||||| Sbjct 46822 ATACTACTAAAGTAATATAGGCTATTTAGTAGGTTAAGGTCTTATTTGTTATTACAATTA 46763 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||| |||| ||||||||||||| || || ||| || ||| ||| |||||||| Sbjct 46762 AGCAGACAAATTACTCTACCAACTAAGAACAGCTATACACTACTACCTATAAAATCAAGA 46703 Query 241 AAGAGCTATCAATCT 255 ||||||| | ||||| Sbjct 46702 AAGAGCTCTTAATCT 46688 Score = 201 bits (222), Expect = 2e-49 Identities = 193/246 (78%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 |||| | ||| || ||||||||||||| |||| ||||||||| || | |||||| |||| Sbjct 28697 GCTCTATTAGTATAACGCGCGTGCGGCCTAGAATATCTAAGGGTATTATAGACCTATTAT 28638 Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129 ||||| ||||||| ||| ||| |||| ||||||||||||||||||| || | || | Sbjct 28637 TGCCTTAAACTTCTATTAGCTT-AAGCTAATAGTCCCTCTAAGAAGCTAGTATACTACTA 28579 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| |||||||||| |||||||||||| || |||||| |||||| ||||||| Sbjct 28578 AAGTAATATAGGCTATTTAGTAGGTTAAGGTCTTATTTGTTATCACAATTAAGCAGACAA 28519 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 || |||| || ||||||||| || || || || ||| ||| ||| ||||||||||| | Sbjct 28518 ATTACTCTACTAACTAAGAATAGCTATATACTACTACCTATAAAATTAAGAAAGAGCTCT 28459 Query 250 CAATCT 255 ||||| Sbjct 28458 TAATCT 28453 Score = 179 bits (198), Expect = 6e-43 Identities = 188/246 (76%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 |||| | ||| || | ||| || ||| |||| ||||||||| || | |||||| |||| Sbjct 37446 GCTCTATTAGTATAACACGCATGTAGCCTAGAATATCTAAGGGTATTATAGACCTATTAT 37387 Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129 ||||| ||||||| ||| | | |||| |||||||||||||| |||| ||| | || | Sbjct 37386 TGCCTTAAACTTCTATTAGTTT-AAGCTAATAGTCCCTCTAAAAAGCTAGCGTACTACTA 37328 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| |||||||||| |||||||||||| || ||||| |||||| ||| || Sbjct 37327 AAGTAATATAGGCTATTTAGTAGGTTAAGGTCTTATTTGTTATTACAATTAAGTAGATAA 37268 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 || |||| || ||||||||||||| || ||| || ||| ||| ||| ||||||||||| | Sbjct 37267 ATTACTCTACTAACTAAGAACGGCTATACACTACTACCTATAAAATTAAGAAAGAGCTCT 37208 Query 250 CAATCT 255 ||||| Sbjct 37207 TAATCT 37202 Score = 159 bits (176), Expect = 6e-37 Identities = 173/228 (76%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 28 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTG 87 |||| |||| |||| ||||||||| || | |||||| ||||| ||| ||||||| ||| Sbjct 8953 GCGTATGGCCTAGAATATCTAAGGGTATTATAGACCTATTATTACCTTAAACTTCTATTA 8894 Query 88 GCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTT 147 ||| |||| ||||||||||||||||||| ||| | || | ||| |||||||| Sbjct 8893 GCTT-AAGCTAATAGTCCCTCTAAGAAGCTAGCGTACTACTAAAGTAATATAGGCTATTT 8835 Query 148 AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 207 || |||||||||||| || |||| |||||| ||| |||| |||| || ||||||| Sbjct 8834 AGTAGGTTAAGGTCTTATTTATTATTATAATTAAGTAGATAAATTACTCTACTAACTAAG 8775 Query 208 AACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 || || || || || || ||| ||| ||||||||||| | ||||| Sbjct 8774 AATAGCTATATACTACTACTTATAAAATTAAGAAAGAGCTCTTAATCT 8727 >seq118 Length=165338 Score = 150 bits (166), Expect = 3e-34 Identities = 168/223 (75%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 35 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAA 94 ||| |||| ||||||||| || |||||||| ||||| ||| ||||||| ||| | | || Sbjct 118985 GCCTAGAATATCTAAGGGTATTACAGACCTATTATTACCTTAAACTTCTATTAGGTT-AA 119043 Query 95 GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGT 154 || ||||||||||||||||||| | | | || | ||| || | |||||||||| Sbjct 119044 GCTAATAGTCCCTCTAAGAAGCTAACGTACTACTAAAGTAAGACAGGATGTTTAGCAGGT 119103 Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 |||||||| || ||| | ||| || ||| |||| |||| || ||||||||| || Sbjct 119104 TAAGGTCTTATTTGTTGTTATAATGAAGTAGATAAATTACTCTACTAACTAAGAATAGCT 119163 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 || || || ||| ||| ||| ||||||||||| | ||||||| Sbjct 119164 ATATACTACTACCTATAAAATTAAGAAAGAGCTCTTAATCTGT 119206 >seq367 Length=12900 Score = 114 bits (126), Expect = 2e-23 Identities = 99/121 (82%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| | |||||| |||| || ||||||||||||| |||||||| ||||||||||||| Sbjct 6215 TACTCGCTTGCTCCGCCAGTATAACGCGCGTGCGGCCTAGAACATCCAAGGGCATCACAG 6274 Query 61 ACCT----GTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||| ||||| ||| ||||| ||| |||| | |||| ||||||||||| |||| | Sbjct 6275 ACCTGTTAGTTATGAACTCGAACTTGCATCGGCTTG-AGCCGATAGTCCCTCTCAGAATC 6333 Query 117 C 117 | Sbjct 6334 C 6334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796795769988