Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq207 298 9e-79 >seq207 Length=60267 Score = 298 bits (330), Expect = 9e-79 Identities = 244/295 (83%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| ||| | ||| || ||||||||||||||||||| ||| | Sbjct 41808 TACTAAGCTTAATTACTATTACAATAA-GGTTATTAGTAGGGTAAAACTAACCTATCTTA 41750 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || ||||||||| |||| || |||||||||||| |||||| |||| || ||||| | Sbjct 41749 CGATAGTCTAAACCTAGCTTACATTCCCTATTAGTAGGTGAATAATCTAATACTTACTAA 41690 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| ||| |||| ||||||||||| |||| |||||| |||||| ||||||||||| Sbjct 41689 ATTCTACTTTAGTATAATAGGAAGAGCTAACATTAAAGGATTAAAAAGTAACGTCGCTAT 41630 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||| || || | |||| |||||||||| ||||||||||||| ||||||||||||| Sbjct 41629 AAACGCTTAGCCGCTATAAGCTAGTTATCCCTATGGTAACTTTTCTAGCACCTCTAGCCT 41570 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||| |||||||||||||| |||||||| ||||| ||||||||||||||| Sbjct 41569 TAAATTTCAAGGGACTAAAGGATTAATAGGCCATACTTTTATGGTTTGTATTCAC 41515 Score = 298 bits (330), Expect = 9e-79 Identities = 244/295 (83%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| ||| | | |||||||| ||||||||||||||||| ||||| Sbjct 50733 TACTAAGCTTAATTACTATTACAACAA-GGTCATCAATAGGGTAAAACTAACCTATCTCA 50675 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | || ||||||||| |||| ||||||||||||||| ||| || |||| || ||||| | Sbjct 50674 TAACAGTCTAAACCTAGCTTACGTTCCCTATTAGTAGGTAAATAATCTAATACTTACTAA 50615 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| ||| |||| ||| ||||||| ||||| |||||| ||||||||| | |||| Sbjct 50614 ATTCTACTTTAGTATAATAAGAAGAGCTAACATCAAAGGATTAAAAAGCAATATTACTAT 50555 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||| ||||| | |||| |||||||||| | ||||||||||| ||||||||||||| Sbjct 50554 AAACGCTTAGCTGCTATAAGCTAGTTATCCCTATAGTAACTTTTCTAGCACCTCTAGCCT 50495 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||| |||||||||||||| |||||||||||||| || |||||||||||| Sbjct 50494 TAAATTTTAAGGGACTAAAGGATTAATAGGCCACACTTTTATAGTTTGTATTCAC 50440 Score = 298 bits (330), Expect = 9e-79 Identities = 242/292 (83%), Gaps = 1/292 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||| | | ||| || ||||||||||||||||||| ||||| Sbjct 59510 TACTAAGCTCAATTACCATTACAACAA-GGTTATTAGTAGGGTAAAACTAACCTATCTCA 59452 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | || ||||||||| |||| ||||||||||||||| ||| || |||| || |||||| | Sbjct 59451 TAACAGTCTAAACCTAGCTTACGTTCCCTATTAGTAGGTAAATAATCTAATGCTTACTAA 59392 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| ||| |||| ||| ||||||| ||||| |||||| ||||||| || ||||||| Sbjct 59391 ATTCTACTTTAGTATAATAAGAAGAGCTAACATCAAAGGATTAAAAAGCGACATCGCTAT 59332 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||| ||||| | |||| |||||||||| | ||||||||||| ||||||||||||| Sbjct 59331 AAACGCTTAGCTGCTATAAGCTAGTTATCCCTATAGTAACTTTTCTAGCACCTCTAGCCT 59272 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 |||||| |||||||||||||| |||||| | ||||| || ||||||||| Sbjct 59271 TAAATTTTAAGGGACTAAAGGATTAATAGGCTATACTTTTATAGTTTGTATT 59220 Score = 257 bits (284), Expect = 3e-66 Identities = 234/294 (80%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| ||| | ||| || ||||||||||||||||||| ||| | Sbjct 32498 TACTAAGCTTAATTACTATTACAATAA-GGTTATTAGTAGGGTAAAACTAACCTATCTTA 32440 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | | ||||||||| |||| | |||||||||||| ||| ||||||| || ||||| | Sbjct 32439 TAATAGTCTAAACCTAGCTTATATTCCCTATTAGTAGGTAAACAATCTAATACTTACTAA 32380 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||| |||| ||||||||||| | || |||||| ||||||| | | |||| Sbjct 32379 ATTCTGCTTTAGTATAATAGGAAGAGCTAATATTAAAGGATTAAAAAGCGATATTACTAT 32320 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| |||| ||| | | |||| |||||||||| | ||||||||||| | ||||||||||| Sbjct 32319 GAATGCTTAGCTACTATAAGCTAGTTATCCCTATAGTAACTTTTCTAGTACCTCTAGCCT 32260 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||||| |||||||||||||| |||||| | ||||| |||||||||||||| Sbjct 32259 TAAATTTTAAGGGACTAAAGGATTAATAGGCTATACTTTTATGGTTTGTATTCA 32206 Score = 248 bits (274), Expect = 1e-63 Identities = 231/292 (79%), Gaps = 1/292 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| ||| | ||| || ||||||||||||||||||| ||| | Sbjct 23599 TACTAAGCTTAATTACTATTATAATAA-GGTTATTAGTAGGGTAAAACTAACCTATCTTA 23541 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||| ||||||||| |||| | |||||||||||| ||| ||||||| || ||||| | Sbjct 23540 TGATAGTCTAAACCTAGCTTATATTCCCTATTAGTAGGTAAACAATCTAATACTTACTAA 23481 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| ||| |||| ||||||||||| || || |||||| ||||||| | | |||| Sbjct 23480 ATTCTACTTTAGTATAATAGGAAGAGCTGATATTAAAGGATTAAAAAGCGATATTACTAT 23421 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 || |||| ||||| | |||| |||||||||| | ||||||||| ||| ||||||||||| Sbjct 23420 AAATGCTTAGCTGCTATAAGCTAGTTATCCCTATAGTAACTTTTTTGGTACCTCTAGCCT 23361 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 |||||| |||||||||||||| |||||| | ||||| || |||| |||| Sbjct 23360 TAAATTTTAAGGGACTAAAGGATTAATAGGCTATACTTTTATAGTTTATATT 23309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854395317888