Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq441 178 2e-42 seq207 111 2e-22 >seq441 Length=6970 Score = 178 bits (196), Expect = 2e-42 Identities = 157/192 (82%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 3522 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 3581 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| ||| ||||||||||||||||| || || Sbjct 3582 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCACAGTAAAAGTCCTGGTTCC-CCCCA 3640 Query 126 CA-CCAATGAAGGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| ||||||| || || ||| ||| ||| | | |||||||||| Sbjct 3641 CAGCCAGTGAAGGCCATGAGGTTCCCCAGAAGGAAAGGCCCAGCCGGACCAGTACTCGCG 3700 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 3701 GTGAGGCGGACC 3712 >seq207 Length=60267 Score = 111 bits (122), Expect = 2e-22 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| ||||||||||||||||||| ||||||||||||| | Sbjct 28063 CTAGAAACTAATAAAATAGAACTATACGTCCTATTCTATTATTCTATGCTAATGTATTTG 28004 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 | || |||||| | || |||||||||||| | || |||||||||||| |||| Sbjct 28003 AGTATAGGCCTGCCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGCTTCC 27950 Score = 98.7 bits (108), Expect = 1e-18 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| ||||||||||||||| |||||||||||||||||||| || ||||| |||| Sbjct 46298 CTAAAAACCAACAAAATAGAACTACACGTCCTATTCTATTATTCTATACTAATATATTTA 46239 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 | || |||| | | | |||||||||||| |||| ||||||||||| |||| Sbjct 46238 AGTATAGGCCTACCTAAAGCACTCTAATTTTTTCAAAGTAAAAGTCCTACTTCC 46185 Score = 93.3 bits (102), Expect = 5e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 2 GTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTA 61 |||| ||||||| || ||||||| |||||||||||||||||||| ||||||||||| Sbjct 8340 GTCT-TAGAAACTAATAAAATAGAACTACACGTCCTATTCTATTATTCTATGCTAATGTA 8282 Query 62 TTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 || | || |||| | | | ||||||||||| | || ||||||||||| |||| Sbjct 8281 TTTAAGTATAGGCCTACCTAAAGTACTCTAATTTTTTTAAAGTAAAAGTCCTACTTCC 8224 Score = 93.3 bits (102), Expect = 5e-17 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| | |||||||||||||||||| |||||||| |||| Sbjct 36812 CTAGAAACTAATAAAATAGAACTACGCGTCCTATTCTATTATTCTATGCTAATATATTTA 36753 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 | || |||||| | || ||||||| ||| | || |||||||||||| |||| Sbjct 36752 AGTATAGGCCTGCCTAGAGTACTCTAAATTTTTTAAAGTAAAAGTCCTGCTTCC 36699 Score = 93.3 bits (102), Expect = 5e-17 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| |||| || ||||||| |||||| ||||||||||||| |||||||| |||| Sbjct 55075 CTAAAAACTAATAAAATAGAACTACACGTCTTATTCTATTATTCTATGCTAATATATTTA 55016 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 | || |||| | | || |||||||||||| | || ||||||||||| |||| ||| Sbjct 55015 AGTATAGGCCTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTACTTCCCTAGCA 54956 Query 126 CACC 129 |||| Sbjct 54955 CACC 54952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595196840232