Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq441 178 2e-42
seq207 111 2e-22
>seq441
Length=6970
Score = 178 bits (196), Expect = 2e-42
Identities = 157/192 (82%), Gaps = 3/192 (2%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3522 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 3581
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| | |||||||||||||||||||||||| ||| ||||||||||||||||| || ||
Sbjct 3582 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCACAGTAAAAGTCCTGGTTCC-CCCCA 3640
Query 126 CA-CCAATGAAGGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGCC 183
|| ||| ||||||| || || ||| ||| ||| | | ||||||||||
Sbjct 3641 CAGCCAGTGAAGGCCATGAGGTTCCCCAGAAGGAAAGGCCCAGCCGGACCAGTACTCGCG 3700
Query 184 GTGAGGCGGACC 195
||||||||||||
Sbjct 3701 GTGAGGCGGACC 3712
>seq207
Length=60267
Score = 111 bits (122), Expect = 2e-22
Identities = 93/114 (82%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| ||||||||||||||||||| ||||||||||||| |
Sbjct 28063 CTAGAAACTAATAAAATAGAACTATACGTCCTATTCTATTATTCTATGCTAATGTATTTG 28004
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119
| || |||||| | || |||||||||||| | || |||||||||||| ||||
Sbjct 28003 AGTATAGGCCTGCCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGCTTCC 27950
Score = 98.7 bits (108), Expect = 1e-18
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||| ||||||||||||||| |||||||||||||||||||| || ||||| ||||
Sbjct 46298 CTAAAAACCAACAAAATAGAACTACACGTCCTATTCTATTATTCTATACTAATATATTTA 46239
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119
| || |||| | | | |||||||||||| |||| ||||||||||| ||||
Sbjct 46238 AGTATAGGCCTACCTAAAGCACTCTAATTTTTTCAAAGTAAAAGTCCTACTTCC 46185
Score = 93.3 bits (102), Expect = 5e-17
Identities = 92/118 (78%), Gaps = 1/118 (1%)
Strand=Plus/Minus
Query 2 GTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTA 61
|||| ||||||| || ||||||| |||||||||||||||||||| |||||||||||
Sbjct 8340 GTCT-TAGAAACTAATAAAATAGAACTACACGTCCTATTCTATTATTCTATGCTAATGTA 8282
Query 62 TTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119
|| | || |||| | | | ||||||||||| | || ||||||||||| ||||
Sbjct 8281 TTTAAGTATAGGCCTACCTAAAGTACTCTAATTTTTTTAAAGTAAAAGTCCTACTTCC 8224
Score = 93.3 bits (102), Expect = 5e-17
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| | |||||||||||||||||| |||||||| ||||
Sbjct 36812 CTAGAAACTAATAAAATAGAACTACGCGTCCTATTCTATTATTCTATGCTAATATATTTA 36753
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119
| || |||||| | || ||||||| ||| | || |||||||||||| ||||
Sbjct 36752 AGTATAGGCCTGCCTAGAGTACTCTAAATTTTTTAAAGTAAAAGTCCTGCTTCC 36699
Score = 93.3 bits (102), Expect = 5e-17
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||| |||| || ||||||| |||||| ||||||||||||| |||||||| ||||
Sbjct 55075 CTAAAAACTAATAAAATAGAACTACACGTCTTATTCTATTATTCTATGCTAATATATTTA 55016
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
| || |||| | | || |||||||||||| | || ||||||||||| |||| |||
Sbjct 55015 AGTATAGGCCTACCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTACTTCCCTAGCA 54956
Query 126 CACC 129
||||
Sbjct 54955 CACC 54952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595196840232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |