Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq441 286 4e-75
seq207 188 7e-46
>seq441
Length=6970
Score = 286 bits (316), Expect = 4e-75
Identities = 177/188 (94%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 3635 GGAACCAGGACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 3576
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3575 CATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 3517
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 3516 CCGTAATGATTAATAGGGATAGTCGGGGGCGTCAGTATTCAGCTGTCAGAGGTGAAATTC 3457
Query 181 TTGGATTT 188
||||||||
Sbjct 3456 TTGGATTT 3449
>seq207
Length=60267
Score = 188 bits (208), Expect = 7e-46
Identities = 157/191 (82%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| ||||||||||||||| |||||||||||| | || | |||||||| | ||| ||||
Sbjct 27950 GGAAGCAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAGGCCTATACTCAAATA 28009
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||| ||||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 28010 CATTAGCATAGAATAATAGAATAGGACGTATAGTTCTATTTTATTAGTTTCTAGGACC-A 28068
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|| |||| || |||| ||||||| |||| | |||||| |||| | | |||| ||||||
Sbjct 28069 CCATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 28128
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 28129 TTAGATTTATT 28139
Score = 174 bits (192), Expect = 2e-41
Identities = 154/191 (81%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| ||||||||||||||||||||||||||| | | | | |||||| | || ||||
Sbjct 46185 GGAAGTAGGACTTTTACTTTGAAAAAATTAGAGTGCTTTAGGTAGGCCTATACTTAAATA 46244
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| || |||||||||||||||||||| |||||||||||| ||||| |||||| |
Sbjct 46245 TATTAGTATAGAATAATAGAATAGGACGTGTAGTTCTATTTTGTTGGTTTTTAGGACTG- 46303
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||||||| |||| ||||||| |||| | |||||| |||| | | | || ||||||
Sbjct 46304 CTGTAATGATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAAGTAAAATTC 46363
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 46364 TTAGATTTATT 46374
Score = 170 bits (188), Expect = 2e-40
Identities = 153/191 (80%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | || | | |||||| | || ||||
Sbjct 54962 GGAAGTAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAGGCCTATACTTAAATA 55021
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| ||| ||||||||||||| |||||| |||||||||| | |||| ||||| |
Sbjct 55022 TATTAGCATAGAATAATAGAATAAGACGTGTAGTTCTATTTTATTAGTTTTTAGGA-CTA 55080
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| ||||| || |||| ||||||| ||||| | |||||| |||| | | |||||||||||
Sbjct 55081 CTGTAATAATTAATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTC 55140
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 55141 TTAGATTTATT 55151
Score = 161 bits (178), Expect = 1e-37
Identities = 151/191 (79%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | | | |||||| | || ||||
Sbjct 8224 GGAAGTAGGACTTTTACTTTAAAAAAATTAGAGTACTTTAGGTAGGCCTATACTTAAATA 8283
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||| |||||||||||||||||||| |||||||||| | ||||||| || |
Sbjct 8284 CATTAGCATAGAATAATAGAATAGGACGTGTAGTTCTATTTTATTAGTTTCTAAGA-CTA 8342
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| ||||| | |||||| |||| | | |||| ||||||
Sbjct 8343 CTATAATAATTAATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTC 8402
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 8403 TTAGATTTATT 8413
Score = 161 bits (178), Expect = 1e-37
Identities = 151/191 (79%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| ||||||||||||||| ||||| |||||| || | |||||||| | || ||||
Sbjct 36699 GGAAGCAGGACTTTTACTTTAAAAAATTTAGAGTACTCTAGGCAGGCCTATACTTAAATA 36758
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| ||| |||||||||||||||||| | |||||||||| | |||||||||| |
Sbjct 36759 TATTAGCATAGAATAATAGAATAGGACGCGTAGTTCTATTTTATTAGTTTCTAGGA-CTA 36817
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| |||| | |||||| |||| | | |||| ||||||
Sbjct 36818 CTATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 36877
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 36878 TTAGATTTATT 36888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511997281920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |