Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq441 286 4e-75 seq207 188 7e-46 >seq441 Length=6970 Score = 286 bits (316), Expect = 4e-75 Identities = 177/188 (94%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 3635 GGAACCAGGACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 3576 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3575 CATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 3517 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct 3516 CCGTAATGATTAATAGGGATAGTCGGGGGCGTCAGTATTCAGCTGTCAGAGGTGAAATTC 3457 Query 181 TTGGATTT 188 |||||||| Sbjct 3456 TTGGATTT 3449 >seq207 Length=60267 Score = 188 bits (208), Expect = 7e-46 Identities = 157/191 (82%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||||| |||||||||||| | || | |||||||| | ||| |||| Sbjct 27950 GGAAGCAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAGGCCTATACTCAAATA 28009 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||| ||||||||||||||||||| |||||||||| | |||||||||||| Sbjct 28010 CATTAGCATAGAATAATAGAATAGGACGTATAGTTCTATTTTATTAGTTTCTAGGACC-A 28068 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 || |||| || |||| ||||||| |||| | |||||| |||| | | |||| |||||| Sbjct 28069 CCATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 28128 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 28129 TTAGATTTATT 28139 Score = 174 bits (192), Expect = 2e-41 Identities = 154/191 (81%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||||||||||||||||| | | | | |||||| | || |||| Sbjct 46185 GGAAGTAGGACTTTTACTTTGAAAAAATTAGAGTGCTTTAGGTAGGCCTATACTTAAATA 46244 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| || |||||||||||||||||||| |||||||||||| ||||| |||||| | Sbjct 46245 TATTAGTATAGAATAATAGAATAGGACGTGTAGTTCTATTTTGTTGGTTTTTAGGACTG- 46303 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||||||| |||| ||||||| |||| | |||||| |||| | | | || |||||| Sbjct 46304 CTGTAATGATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAAGTAAAATTC 46363 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 46364 TTAGATTTATT 46374 Score = 170 bits (188), Expect = 2e-40 Identities = 153/191 (80%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | || | | |||||| | || |||| Sbjct 54962 GGAAGTAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGTAGGCCTATACTTAAATA 55021 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||| ||||||||||||| |||||| |||||||||| | |||| ||||| | Sbjct 55022 TATTAGCATAGAATAATAGAATAAGACGTGTAGTTCTATTTTATTAGTTTTTAGGA-CTA 55080 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | ||||| || |||| ||||||| ||||| | |||||| |||| | | ||||||||||| Sbjct 55081 CTGTAATAATTAATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTC 55140 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 55141 TTAGATTTATT 55151 Score = 161 bits (178), Expect = 1e-37 Identities = 151/191 (79%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | | | |||||| | || |||| Sbjct 8224 GGAAGTAGGACTTTTACTTTAAAAAAATTAGAGTACTTTAGGTAGGCCTATACTTAAATA 8283 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||| |||||||||||||||||||| |||||||||| | ||||||| || | Sbjct 8284 CATTAGCATAGAATAATAGAATAGGACGTGTAGTTCTATTTTATTAGTTTCTAAGA-CTA 8342 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| ||||| | |||||| |||| | | |||| |||||| Sbjct 8343 CTATAATAATTAATAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTC 8402 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 8403 TTAGATTTATT 8413 Score = 161 bits (178), Expect = 1e-37 Identities = 151/191 (79%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||||| ||||| |||||| || | |||||||| | || |||| Sbjct 36699 GGAAGCAGGACTTTTACTTTAAAAAATTTAGAGTACTCTAGGCAGGCCTATACTTAAATA 36758 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||| |||||||||||||||||| | |||||||||| | |||||||||| | Sbjct 36759 TATTAGCATAGAATAATAGAATAGGACGCGTAGTTCTATTTTATTAGTTTCTAGGA-CTA 36817 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| |||| | |||||| |||| | | |||| |||||| Sbjct 36818 CTATAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 36877 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 36878 TTAGATTTATT 36888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511997281920