Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq441 416 5e-114
seq207 257 3e-66
seq367 197 3e-48
seq118 114 2e-23
seq56 84.2 4e-14
>seq441
Length=6970
Score = 416 bits (460), Expect = 5e-114
Identities = 266/290 (92%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 39 TAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGACTATCGGCTCAAGC 98
||||||||| || |||| | ||||| ||| |||||||||| ||||||||||||||||||
Sbjct 3025 TAAATAGCCCGGTCCGCATCTGCGGGCCGCTGGCTTCTTAGGGGGACTATCGGCTCAAGC 2966
Query 99 CGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 158
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2965 CGATGGAAGTGCGCGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 2906
Query 159 GCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTG 218
||||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 2905 GCGCTACACTGACAGGGCCAGCGAGTACATCACCTTGGCCGAGAGGTCTGGGTAATCTTG 2846
Query 219 TTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2845 TTAAACCCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 2786
Query 279 TAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||| || || ||||||||| || | ||||||||||||||||||||||
Sbjct 2785 TAGTAGGCACGAGTCATCAGCTCGTGCCGATTACGTCCCTGCCCTTTGTA 2736
>seq207
Length=60267
Score = 257 bits (284), Expect = 3e-66
Identities = 241/304 (79%), Gaps = 2/304 (1%)
Strand=Plus/Plus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||||||||||| |||||||||| |||| | | ||||||||||||||||||
Sbjct 46781 AGACCTTAACCTACTAAATAGCCTATATTACTTTAGTAGTATGCCGGCTTCTTAGAGGGA 46840
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
|||| ||| |||| || ||||||| ||| ||||| |||||| | || ||||||||| |
Sbjct 46841 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTCTATAATACCCTTAGATAT 46900
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
||| |||| || |||| || ||| | ||||| | |||| | || ||||||||||||||
Sbjct 46901 TCTAGGCCATACACGCGTTATACTAATAGAGCTAGTGAGTAC-TC-CCTTGGCCGGAAGG 46958
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| ||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct 46959 CCTAGGTAATCTTATTAAACTCTGTTATGCTAGGGATAGAGCATTATAATTATTGCTCTT 47018
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
|| ||||||| |||||||||| || || ||| | ||||||||||||||| |||||
Sbjct 47019 TAATGAGGAATCCCTAGTAAGCATAAGTTATTAGCTTGTGTTGATTACGTCCCTACCCTT 47078
Query 325 TGTA 328
| ||
Sbjct 47079 TATA 47082
Score = 248 bits (274), Expect = 2e-63
Identities = 240/306 (78%), Gaps = 2/306 (1%)
Strand=Plus/Plus
Query 23 CGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGG 82
|||||||||||||| |||||||||| | ||||| | | || ||||||||||||
Sbjct 55556 CGAGACCTTAACCTACTAAATAGCCTGTATTGCTTTAGTAGTATGCTAGCTTCTTAGAGG 55615
Query 83 GACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGAT 142
|||||| ||| |||| || ||||||||||| ||||| |||||||| ||||||||||||
Sbjct 55616 GACTATTAGCTTAAGCTAATAGAAGTTTGAGGTAATAATAGGTCTGTAATGCCCTTAGAT 55675
Query 143 GTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAA 202
|||| ||||| ||| ||| || ||| | ||||| | ||| | || |||| || |||
Sbjct 55676 ATTCTAGGCCGTACGTGCGTTATACTAATAGAGCTAGTAAGTAC-TC-CCTTAGCTAGAA 55733
Query 203 GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTC 262
|| || ||||||||||||||||||| | ||| ||||||||||| ||| ||||||| |||
Sbjct 55734 GGCCTAGGTAATCTTGTTAAACTCTATTGTGTTGGGGATAGAGTATTATAATTATTACTC 55793
Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322
|| || |||||| |||||||||| || || ||| | ||| ||||||||||| |||
Sbjct 55794 TTTAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTGTGTTAATTACGTCCCTACCC 55853
Query 323 TTTGTA 328
||| ||
Sbjct 55854 TTTATA 55859
Score = 208 bits (230), Expect = 1e-51
Identities = 230/304 (76%), Gaps = 2/304 (1%)
Strand=Plus/Plus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||||||||||| |||||||||| |||| | | | ||||||||||||||
Sbjct 28546 AGACCTTAACCTACTAAATAGCCTATATTACTTTAGTAGTATACTAGCTTCTTAGAGGGA 28605
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
|||| ||| |||| || ||||||| ||||||||| |||||| | || ||||||||| |
Sbjct 28606 CTATTAGCTTAAGCTAATAGAAGTTTAAGGCAATAATAGGTCTATAATACCCTTAGATAT 28665
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
||| ||||||||||||| || ||| | ||||| | ||| | || |||| || |||||
Sbjct 28666 TCTAGGCCGCACGCGCGTTATACTAATAGAGCTAGTAAGTAC-TC-CCTTAGCTAGAAGG 28723
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| ||||||||| | | || ||||||||| ||| ||||||| |||||
Sbjct 28724 CCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAGAGTATTATAATTATTACTCTT 28783
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
|| |||||| |||||||||| || || ||| | || ||||| ||||| |||||
Sbjct 28784 TAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTGTATTAATTACATCCCTACCCTT 28843
Query 325 TGTA 328
| ||
Sbjct 28844 TATA 28847
Score = 194 bits (214), Expect = 3e-47
Identities = 227/304 (75%), Gaps = 2/304 (1%)
Strand=Plus/Plus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||||||||||| |||||||||| |||| | | ||| |||| |||||||||
Sbjct 37295 AGACCTTAACCTACTAAATAGCCTATATTACTTTAGTAGTACGCTAGCTTTTTAGAGGGA 37354
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
|||| ||| || | || ||||||| ||||||||| |||||| | || ||||||||| |
Sbjct 37355 CTATTAGCTTAAACTAATAGAAGTTTAAGGCAATAATAGGTCTATAATACCCTTAGATAT 37414
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
||| ||| || ||| | || ||| | ||||| | ||| | || |||| ||| |||||
Sbjct 37415 TCTAGGCTACATGCGTGTTATACTAATAGAGCTAGTAAGTAC-TC-CCTTAGCCAGAAGG 37472
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| ||||||||| | | || ||||||||| ||| ||||||| |||||
Sbjct 37473 CCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAGAGTATTATAATTATTACTCTT 37532
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
|| |||||| |||||||||| || || ||| || ||||||||||| |||||
Sbjct 37533 TAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTATATTAATTACGTCCCTACCCTT 37592
Query 325 TGTA 328
| ||
Sbjct 37593 TATA 37596
Score = 190 bits (210), Expect = 4e-46
Identities = 226/304 (74%), Gaps = 2/304 (1%)
Strand=Plus/Plus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||||||||||| |||||||||| |||| | | ||| ||||||||||||||
Sbjct 8820 AGACCTTAACCTACTAAATAGCCTATATTACTTTAGTAGTACGCTAGCTTCTTAGAGGGA 8879
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
|||| ||| |||| || ||||||| ||| ||||| |||||| | || ||||||||| |
Sbjct 8880 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTCTATAATACCCTTAGATAT 8939
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
||| |||| |||| || ||| | ||||| | ||| | || |||| || |||||
Sbjct 8940 TCTAGGCCATACGCATATTATACTAATAGAGCTAGTAAGTAC-TC-CCTTAGCTAGAAGG 8997
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| ||||||||||| | || ||||||||| ||| |||||||| |||||
Sbjct 8998 CCTAGGTAATCTTATTAAACTCTGTTATACTAGGGATAGAGTATTACAATTATTACTCTT 9057
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
|| |||||| |||||||||| || || ||| || |||| ||||| |||||
Sbjct 9058 TAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTATATTAATTATATCCCTACCCTT 9117
Query 325 TGTA 328
| ||
Sbjct 9118 TATA 9121
>seq367
Length=12900
Score = 197 bits (218), Expect = 3e-48
Identities = 163/196 (83%), Gaps = 11/196 (6%)
Strand=Plus/Minus
Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAAC---- 121
|| ||| |||| |||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 6338 CGACGGATTCTGAGAGGGACTATCGGCTCAAGCCGATGCAAGTTCGAGTTCATAACTAAC 6279
Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181
||||||||||||||||| |||||||| ||||||||||||| || |||| | |||| | ||
Sbjct 6278 AGGTCTGTGATGCCCTTGGATGTTCTAGGCCGCACGCGCGTTATACTGGCGGAGCAAGCG 6219
Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241
||| | || |||||||||||||| | ||||||||| ||| | ||||||||||||||
Sbjct 6218 AGTAC-TC-CCTTGGCCGGAAGGCCCGGGTAATCT-----AACGCCGTCGTGCTGGGGAT 6166
Query 242 AGAGCATTGCAATTAT 257
||||||||||| ||||
Sbjct 6165 AGAGCATTGCAGTTAT 6150
>seq118
Length=165338
Score = 114 bits (126), Expect = 2e-23
Identities = 144/195 (74%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||||||||||||||||| | || | | |||| | | || ||||||||||||||
Sbjct 119111 AGACCTTAACCTGCTAAACATCCTGTCTTACTTTAGTAGTACGTTAGCTTCTTAGAGGGA 119052
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
|||| ||| || | || ||||||| ||| ||||| |||||||| || ||||||||| |
Sbjct 119051 CTATTAGCTTAACCTAATAGAAGTTTAAGGTAATAATAGGTCTGTAATACCCTTAGATAT 118992
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
||| ||| ||| || ||| | ||||||| ||| | || |||| || |||||
Sbjct 118991 TCTAGGCTATACGTATATTATACTCATAGAGCCAGTAAGTAC-TC-CCTTAGCTAGAAGG 118934
Query 205 TCTGGGTAATCTTGT 219
|| |||||||||||
Sbjct 118933 CCTAGGTAATCTTGT 118919
>seq56
Length=307326
Score = 84.2 bits (92), Expect = 4e-14
Identities = 77/94 (82%), Gaps = 4/94 (4%)
Strand=Plus/Minus
Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233
||||| ||||| |||| | || | |||||| | || |||||||||||||||| ||||||
Sbjct 107216 AGCCAGCGAGTGCATC--CGTGTCTGGAAGGCC-GGATAATCTTGTTAAACTCGGTCGTG 107160
Query 234 CTGGGGATAGAGCATTGCAATTATT-GCTCTTCA 266
|||| ||||||||||| | ||||| |||||||
Sbjct 107159 CTGGATATAGAGCATTGTAGTTATTCTCTCTTCA 107126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947194809344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |