Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq441 416 5e-114 seq207 257 3e-66 seq367 197 3e-48 seq118 114 2e-23 seq56 84.2 4e-14 >seq441 Length=6970 Score = 416 bits (460), Expect = 5e-114 Identities = 266/290 (92%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 39 TAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGACTATCGGCTCAAGC 98 ||||||||| || |||| | ||||| ||| |||||||||| |||||||||||||||||| Sbjct 3025 TAAATAGCCCGGTCCGCATCTGCGGGCCGCTGGCTTCTTAGGGGGACTATCGGCTCAAGC 2966 Query 99 CGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 158 |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2965 CGATGGAAGTGCGCGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 2906 Query 159 GCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTG 218 ||||||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||| Sbjct 2905 GCGCTACACTGACAGGGCCAGCGAGTACATCACCTTGGCCGAGAGGTCTGGGTAATCTTG 2846 Query 219 TTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2845 TTAAACCCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 2786 Query 279 TAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| || || ||||||||| || | |||||||||||||||||||||| Sbjct 2785 TAGTAGGCACGAGTCATCAGCTCGTGCCGATTACGTCCCTGCCCTTTGTA 2736 >seq207 Length=60267 Score = 257 bits (284), Expect = 3e-66 Identities = 241/304 (79%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| |||||||||| |||| | | |||||||||||||||||| Sbjct 46781 AGACCTTAACCTACTAAATAGCCTATATTACTTTAGTAGTATGCCGGCTTCTTAGAGGGA 46840 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||| ||||| |||||| | || ||||||||| | Sbjct 46841 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTCTATAATACCCTTAGATAT 46900 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| |||| || |||| || ||| | ||||| | |||| | || |||||||||||||| Sbjct 46901 TCTAGGCCATACACGCGTTATACTAATAGAGCTAGTGAGTAC-TC-CCTTGGCCGGAAGG 46958 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||||||| |||| ||||||||||||| ||||||||||||| Sbjct 46959 CCTAGGTAATCTTATTAAACTCTGTTATGCTAGGGATAGAGCATTATAATTATTGCTCTT 47018 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || ||||||| |||||||||| || || ||| | ||||||||||||||| ||||| Sbjct 47019 TAATGAGGAATCCCTAGTAAGCATAAGTTATTAGCTTGTGTTGATTACGTCCCTACCCTT 47078 Query 325 TGTA 328 | || Sbjct 47079 TATA 47082 Score = 248 bits (274), Expect = 2e-63 Identities = 240/306 (78%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 23 CGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGG 82 |||||||||||||| |||||||||| | ||||| | | || |||||||||||| Sbjct 55556 CGAGACCTTAACCTACTAAATAGCCTGTATTGCTTTAGTAGTATGCTAGCTTCTTAGAGG 55615 Query 83 GACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGAT 142 |||||| ||| |||| || ||||||||||| ||||| |||||||| |||||||||||| Sbjct 55616 GACTATTAGCTTAAGCTAATAGAAGTTTGAGGTAATAATAGGTCTGTAATGCCCTTAGAT 55675 Query 143 GTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAA 202 |||| ||||| ||| ||| || ||| | ||||| | ||| | || |||| || ||| Sbjct 55676 ATTCTAGGCCGTACGTGCGTTATACTAATAGAGCTAGTAAGTAC-TC-CCTTAGCTAGAA 55733 Query 203 GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTC 262 || || ||||||||||||||||||| | ||| ||||||||||| ||| ||||||| ||| Sbjct 55734 GGCCTAGGTAATCTTGTTAAACTCTATTGTGTTGGGGATAGAGTATTATAATTATTACTC 55793 Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 || || |||||| |||||||||| || || ||| | ||| ||||||||||| ||| Sbjct 55794 TTTAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTGTGTTAATTACGTCCCTACCC 55853 Query 323 TTTGTA 328 ||| || Sbjct 55854 TTTATA 55859 Score = 208 bits (230), Expect = 1e-51 Identities = 230/304 (76%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| |||||||||| |||| | | | |||||||||||||| Sbjct 28546 AGACCTTAACCTACTAAATAGCCTATATTACTTTAGTAGTATACTAGCTTCTTAGAGGGA 28605 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||||||||| |||||| | || ||||||||| | Sbjct 28606 CTATTAGCTTAAGCTAATAGAAGTTTAAGGCAATAATAGGTCTATAATACCCTTAGATAT 28665 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||||||||||||| || ||| | ||||| | ||| | || |||| || ||||| Sbjct 28666 TCTAGGCCGCACGCGCGTTATACTAATAGAGCTAGTAAGTAC-TC-CCTTAGCTAGAAGG 28723 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||||| | | || ||||||||| ||| ||||||| ||||| Sbjct 28724 CCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAGAGTATTATAATTATTACTCTT 28783 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| |||||||||| || || ||| | || ||||| ||||| ||||| Sbjct 28784 TAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTGTATTAATTACATCCCTACCCTT 28843 Query 325 TGTA 328 | || Sbjct 28844 TATA 28847 Score = 194 bits (214), Expect = 3e-47 Identities = 227/304 (75%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| |||||||||| |||| | | ||| |||| ||||||||| Sbjct 37295 AGACCTTAACCTACTAAATAGCCTATATTACTTTAGTAGTACGCTAGCTTTTTAGAGGGA 37354 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| || | || ||||||| ||||||||| |||||| | || ||||||||| | Sbjct 37355 CTATTAGCTTAAACTAATAGAAGTTTAAGGCAATAATAGGTCTATAATACCCTTAGATAT 37414 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||| || ||| | || ||| | ||||| | ||| | || |||| ||| ||||| Sbjct 37415 TCTAGGCTACATGCGTGTTATACTAATAGAGCTAGTAAGTAC-TC-CCTTAGCCAGAAGG 37472 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||||| | | || ||||||||| ||| ||||||| ||||| Sbjct 37473 CCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAGAGTATTATAATTATTACTCTT 37532 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| |||||||||| || || ||| || ||||||||||| ||||| Sbjct 37533 TAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTATATTAATTACGTCCCTACCCTT 37592 Query 325 TGTA 328 | || Sbjct 37593 TATA 37596 Score = 190 bits (210), Expect = 4e-46 Identities = 226/304 (74%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| |||||||||| |||| | | ||| |||||||||||||| Sbjct 8820 AGACCTTAACCTACTAAATAGCCTATATTACTTTAGTAGTACGCTAGCTTCTTAGAGGGA 8879 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||| ||||| |||||| | || ||||||||| | Sbjct 8880 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTCTATAATACCCTTAGATAT 8939 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| |||| |||| || ||| | ||||| | ||| | || |||| || ||||| Sbjct 8940 TCTAGGCCATACGCATATTATACTAATAGAGCTAGTAAGTAC-TC-CCTTAGCTAGAAGG 8997 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||||||| | || ||||||||| ||| |||||||| ||||| Sbjct 8998 CCTAGGTAATCTTATTAAACTCTGTTATACTAGGGATAGAGTATTACAATTATTACTCTT 9057 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| |||||||||| || || ||| || |||| ||||| ||||| Sbjct 9058 TAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTATATTAATTATATCCCTACCCTT 9117 Query 325 TGTA 328 | || Sbjct 9118 TATA 9121 >seq367 Length=12900 Score = 197 bits (218), Expect = 3e-48 Identities = 163/196 (83%), Gaps = 11/196 (6%) Strand=Plus/Minus Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAAC---- 121 || ||| |||| |||||||||||||||||||||||||| ||||| ||| ||||| Sbjct 6338 CGACGGATTCTGAGAGGGACTATCGGCTCAAGCCGATGCAAGTTCGAGTTCATAACTAAC 6279 Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||||||| |||||||| ||||||||||||| || |||| | |||| | || Sbjct 6278 AGGTCTGTGATGCCCTTGGATGTTCTAGGCCGCACGCGCGTTATACTGGCGGAGCAAGCG 6219 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 ||| | || |||||||||||||| | ||||||||| ||| | |||||||||||||| Sbjct 6218 AGTAC-TC-CCTTGGCCGGAAGGCCCGGGTAATCT-----AACGCCGTCGTGCTGGGGAT 6166 Query 242 AGAGCATTGCAATTAT 257 ||||||||||| |||| Sbjct 6165 AGAGCATTGCAGTTAT 6150 >seq118 Length=165338 Score = 114 bits (126), Expect = 2e-23 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||||||||| | || | | |||| | | || |||||||||||||| Sbjct 119111 AGACCTTAACCTGCTAAACATCCTGTCTTACTTTAGTAGTACGTTAGCTTCTTAGAGGGA 119052 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| || | || ||||||| ||| ||||| |||||||| || ||||||||| | Sbjct 119051 CTATTAGCTTAACCTAATAGAAGTTTAAGGTAATAATAGGTCTGTAATACCCTTAGATAT 118992 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||| ||| || ||| | ||||||| ||| | || |||| || ||||| Sbjct 118991 TCTAGGCTATACGTATATTATACTCATAGAGCCAGTAAGTAC-TC-CCTTAGCTAGAAGG 118934 Query 205 TCTGGGTAATCTTGT 219 || ||||||||||| Sbjct 118933 CCTAGGTAATCTTGT 118919 >seq56 Length=307326 Score = 84.2 bits (92), Expect = 4e-14 Identities = 77/94 (82%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 ||||| ||||| |||| | || | |||||| | || |||||||||||||||| |||||| Sbjct 107216 AGCCAGCGAGTGCATC--CGTGTCTGGAAGGCC-GGATAATCTTGTTAAACTCGGTCGTG 107160 Query 234 CTGGGGATAGAGCATTGCAATTATT-GCTCTTCA 266 |||| ||||||||||| | ||||| ||||||| Sbjct 107159 CTGGATATAGAGCATTGTAGTTATTCTCTCTTCA 107126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947194809344