Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq207 475 1e-131
seq1 154 5e-35
>seq207
Length=60267
Score = 475 bits (526), Expect = 1e-131
Identities = 429/537 (80%), Gaps = 7/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| ||||||||| ||||| || || |||||||||||||||| ||||||
Sbjct 50408 CTTTTGTTCTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAGGACACCTACGTTATA 50349
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||| |||||||||||| ||||||||||||| | ||| || | ||||| | ||
Sbjct 50348 GTTTAACAGATATGCCGCCCCAGCTAAACTCCCCACCTAATAATATCTTTAACCCAGGTC 50289
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGA-CCAGTTCCGCTTCATTG 185
||||| ||||||||||| | |||| | | | | | | |||| | ||| |||
Sbjct 50288 GGCCCATAAAGGACCTTAAAACTAGAA---GTTAGATATAAATCCAGCCCTACTTTATTA 50232
Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245
| ||||||||||||| ||| | ||||| |||||||||| |||| || ||||| || |
Sbjct 50231 AATAAGTAAAAAAACAATAGGAGTAGTAGTATTTCACTAGCGCTAAA---GCTCCTACCT 50175
Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
|||||||||||| | ||| ||| | || | |||| ||| ||||| || ||||||||
Sbjct 50174 ATTCTACACCTCCTATGTCTTTTTATAATATTAAACTAAAGTTAAGCTTAATAGGGTCTT 50115
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
||||||| || |||| | ||||| ||||||| ||| | ||||| |||||||||||||
Sbjct 50114 CTTTCCCTACTAATTCTACTAAGCCTATTCCCTTAGCTATAGTTTCACTAGATAGTAGAT 50055
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||| ||| ||||||| |||||| ||| || || | ||||||||||| || ||||||
Sbjct 50054 AGGGATAGTAGGAATCTTATTAATCTATTTATACGTATTACTAATTAGATAACAAGGCAT 49995
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485
|| ||||||||||||||||||||||||||||||| |||||| | ||| ||| |||| |
Sbjct 49994 TTAGCTACCTTAAGAGAGTCATAGTTACTCCCGCTATTTACCTACACTTAGTTAAATTAC 49935
Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
|||||||| ||||| |||| ||| ||||||||||||||| ||| |||| ||||||||
Sbjct 49934 TTCACTTTAACATTTAGAGTACTAGGCAGAAATCACATTACGTTAACACCACTTTCT 49878
Score = 443 bits (490), Expect = 7e-122
Identities = 422/537 (79%), Gaps = 7/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| ||||||||| ||||| || || |||||||| ||||||| |||||||
Sbjct 59185 CTTTTGTTCTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAAGACACCTACGTTATG 59126
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||| |||| |||||||| ||| |||||||| |||| | ||| || |||||| | ||
Sbjct 59125 GTTTAATAGATATGCCGCCCTAGCTAAACTCCCTACCTAATAATATCTTCAACCTAGGTC 59066
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGA-CCAGTTCCGCTTCATTG 185
|||| ||||||||||| |||||| | | | | | | |||| | ||| |||
Sbjct 59065 GGCCTATAAAGGACCTTAAAACCAGAA---GTTAGATATAAATCCAGCCCTACTTTATTA 59009
Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245
| ||||||||||||| ||| | ||||| |||||||||| |||| || ||||| || |
Sbjct 59008 AATAAGTAAAAAAACAATAGGAGTAGTAGTATTTCACTAGCGCTAAA---GCTCCTACCT 58952
Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
|||||| |||||| | ||| ||| | || || |||||||| ||||| || ||||||||
Sbjct 58951 ATTCTATACCTCTTATGTCTTTTTATAATATCAAACTAGAGTTAAGCTTAATAGGGTCTT 58892
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
||||||| || |||| | ||||| ||||||| ||| | |||| ||||||||||||||
Sbjct 58891 CTTTCCCTACTAATTCTACTAAGCCTATTCCCTTAGCTATAGTTTTGCTAGATAGTAGAT 58832
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||| ||| ||||||| |||||| ||| || |||||||||||||||| || ||| ||
Sbjct 58831 AGGGATAGTAGGAATCTTATTAATCTATTTATATGCGTCACTAATTAGATAACAAGGTAT 58772
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485
|| |||||||||||||||| ||||||||||| | |||||| |||| ||| |||| |
Sbjct 58771 TTAGCTACCTTAAGAGAGTTATAGTTACTCCTGTTATTTACCTATGCTTAGTTAAATTAC 58712
Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
|| ||||| | ||| |||| ||| ||||||||||| ||| ||| |||| |||||||
Sbjct 58711 TTTACTTTAATATTTAGAGTACTAGGCAGAAATCATATTACGTTAACACTACTTTCT 58655
Score = 430 bits (476), Expect = 4e-118
Identities = 418/536 (78%), Gaps = 5/536 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||| ||||| ||||||||| ||||| || || |||||||||||||||| |||||
Sbjct 41483 CTTTTATTCTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAGGACACCTATATTATG 41424
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||| |||| ||| ||| ||| |||||||| |||| | ||| || | |||| | ||
Sbjct 41423 GTTTAATAGATATGCTACCCTAGCTAAACTCCCTACCTAATAATATCTTTAACCTAGGTC 41364
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||| | ||||||||||| |||||| | | || || |||| | |||| ||| |
Sbjct 41363 GGCCTGTAAAGGACCTTAAAACCAGAAGTTAGACGT--AAATCCAGCCCTGCTTTATTAA 41306
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||| |||||| ||| |||| || ||||| || ||
Sbjct 41305 ATAAGTAAAAAAACAATAGGAGTAGTAGTATTTTACTAGCGCTAAA---GCTCCTACCTA 41249
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | || ||| | || || |||||||| |||||||| |||||||||
Sbjct 41248 TTCTACACCTCCTATATCTTTTTATAATATCAAACTAGAGTTAAGCTCAATAGGGTCTTC 41189
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
|||||| || |||| | ||||| ||||||| ||||| |||| |||||||||||||||
Sbjct 41188 TTTCCCTACTAATTCTACTAAGCCTATTCCCTTAGCTGTAGTTTTGCTAGATAGTAGATA 41129
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
|||| ||| ||||||| |||||| ||| || | | ||||||||||| | |||||||
Sbjct 41128 GGGATAGTAGGAATCTTATTAATCTATTTATACATATTACTAATTAGATAATAAGGCATT 41069
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
| |||||||||||||||| |||||||||||||| |||||| ||| ||| |||| ||
Sbjct 41068 TAGCTACCTTAAGAGAGTTATAGTTACTCCCGCTATTTACCTATACTTAGTTAAATTACT 41009
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
| ||||| | ||| |||| ||| ||||||||||| ||| ||| |||| ||||||||
Sbjct 41008 TTACTTTAATATTTAGAGTACTAGGCAGAAATCATATTACGTTAACACCACTTTCT 40953
Score = 412 bits (456), Expect = 1e-112
Identities = 414/536 (77%), Gaps = 5/536 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| ||||||||| ||||| || || |||||||||||||||| |||||
Sbjct 32173 CTTTTGTTCTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAGGACACCTATGTTATA 32114
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||| ||||||||||||| ||| |||||||| |||| | ||| || | |||| | ||
Sbjct 32113 GTTTAATAGATGTGCCGCCCTAGCTAAACTCCCTACCTAATAATATCTTTAACCTAGGTC 32054
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||| ||||||||||| | |||| | | | || |||| |||||| ||| |
Sbjct 32053 GGCCTATAAAGGACCTTAAAACTAGAAGTTAGACAT--AAATCCAGCCCCGCTTTATTAA 31996
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||| |||||| ||| | | || ||||| || ||
Sbjct 31995 ATAAGTAAAAAAACAATAGGAGTAGTAGTATTTTACTAGTACTAAA---GCTCCTACCTA 31939
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||| |||||| | ||| ||| | || | |||||||| ||||| || |||||||||
Sbjct 31938 TTCTATACCTCTTATGTCTTTTTATAATATTAAACTAGAGTTAAGCTTAATAGGGTCTTC 31879
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
|||||| || |||| | ||||| ||||||| ||| | |||| ||||||||||||||
Sbjct 31878 TTTCCCTACTAATTCTACTAAGCCTATTCCCTTAGCTATAGTTTTACTAGATAGTAGATA 31819
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||| ||| ||||||| ||||||| ||| || ||||| ||||||||||| | ||| |||
Sbjct 31818 AGGATAGTAGGAATCTTGTTAATCTATTTATACGCGTTACTAATTAGATAATAAGGTATT 31759
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
| |||||||||||||||| ||||||||||| | |||||| ||| ||| |||| ||
Sbjct 31758 TAGCTACCTTAAGAGAGTTATAGTTACTCCTACTATTTACCTATACTTAGTTAAATTACT 31699
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
| ||||| | ||| |||||||| || |||||||| ||| ||| |||| |||||||
Sbjct 31698 TTACTTTAATATTTAGAGCACTAGGTAGAAATCATATTACGTTAACACTACTTTCT 31643
Score = 331 bits (366), Expect = 3e-88
Identities = 397/537 (74%), Gaps = 7/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| ||||||||| ||||| || || |||||||||||||||| |||||
Sbjct 23274 CTTTTGTTCTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAGGACACCTATGTTATA 23215
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||| |||| |||||||| ||| |||||||| ||| | ||| || | |||| | |
Sbjct 23214 GTTTAATAGATATGCCGCCCTAGCTAAACTCCCTCCCTAATAATATCTTTAACCTAGGTT 23155
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATTG 185
|||| || ||||||| | | || | | | || | | | || | ||| |||
Sbjct 23154 GGCCTATAAAAAACCTTAAAACTAAAA---GTTAGATGTAAATCTAGCCCTACTTTATTA 23098
Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245
| |||||||||||| ||| | ||||| |||||| ||| | | || ||||| || |
Sbjct 23097 AATAAGTAAAAAAATAATAGGAGTAGTAGTATTTTACTAGTACTAAA---GCTCCTACCT 23041
Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
|||||| |||||| | ||| ||| | || | |||||||| ||||| || ||||||||
Sbjct 23040 ATTCTATACCTCTTATGTCTTTTTATAATATTAAACTAGAGTTAAGCTTAATAGGGTCTT 22981
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||||| || |||| || ||||| ||||||| ||| | |||| |||||||||||||
Sbjct 22980 CTTTCCTTACTAATTCTGCTAAGCCTATTCCCTTAGCTATAGTTTTACTAGATAGTAGAT 22921
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||| ||| ||||||| |||||| ||| || | |||||||||| | ||||||
Sbjct 22920 AGGGATAGTAGGAATCTTATTAATCTATTTATATATATTCCTAATTAGATAATAAGGCAT 22861
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485
|| |||||||||||||||| ||||||||||| | |||||| ||| ||| |||| |
Sbjct 22860 TTAGCTACCTTAAGAGAGTTATAGTTACTCCTACTATTTACCTATACTTAGTTAAATTAC 22801
Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
|| ||||| | ||| |||| ||| || |||||| | ||| | || | |||||||
Sbjct 22800 TTTACTTTAATATTTAGAGTACTAGGTAGAAATTATATTATATTAATACTACTTTCT 22744
>seq1
Length=2214490
Score = 154 bits (170), Expect = 5e-35
Identities = 113/130 (87%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||||||||||||||| ||| |||||||| ||| | |||| ||||||||||||||||||
Sbjct 1946040 CTTTCCCCGCTGATTCTGCCCAGCCCGTTTCCTCAGTTGTGCTTTCGCTAGATAGTAGAT 1946099
Query 366 AGGGACAGTGGGAATCTCG-TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424
|| ||| |||||||||||| || || |||||||||||||| ||||||| |||| |||||
Sbjct 1946100 AGAGACCGTGGGAATCTCGTTTGATGCATTCATGCGCGTCGCTAATTAAATGAGAAGGCA 1946159
Query 425 TTTGGCTACC 434
||||||| ||
Sbjct 1946160 TTTGGCTCCC 1946169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635191039104
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