Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq207 475 1e-131 seq1 154 5e-35 >seq207 Length=60267 Score = 475 bits (526), Expect = 1e-131 Identities = 429/537 (80%), Gaps = 7/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||| ||||| || || |||||||||||||||| |||||| Sbjct 50408 CTTTTGTTCTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAGGACACCTACGTTATA 50349 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||| |||||||||||| ||||||||||||| | ||| || | ||||| | || Sbjct 50348 GTTTAACAGATATGCCGCCCCAGCTAAACTCCCCACCTAATAATATCTTTAACCCAGGTC 50289 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGA-CCAGTTCCGCTTCATTG 185 ||||| ||||||||||| | |||| | | | | | | |||| | ||| ||| Sbjct 50288 GGCCCATAAAGGACCTTAAAACTAGAA---GTTAGATATAAATCCAGCCCTACTTTATTA 50232 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | ||||||||||||| ||| | ||||| |||||||||| |||| || ||||| || | Sbjct 50231 AATAAGTAAAAAAACAATAGGAGTAGTAGTATTTCACTAGCGCTAAA---GCTCCTACCT 50175 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 |||||||||||| | ||| ||| | || | |||| ||| ||||| || |||||||| Sbjct 50174 ATTCTACACCTCCTATGTCTTTTTATAATATTAAACTAAAGTTAAGCTTAATAGGGTCTT 50115 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| || |||| | ||||| ||||||| ||| | ||||| ||||||||||||| Sbjct 50114 CTTTCCCTACTAATTCTACTAAGCCTATTCCCTTAGCTATAGTTTCACTAGATAGTAGAT 50055 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||| ||| ||||||| |||||| ||| || || | ||||||||||| || |||||| Sbjct 50054 AGGGATAGTAGGAATCTTATTAATCTATTTATACGTATTACTAATTAGATAACAAGGCAT 49995 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 || ||||||||||||||||||||||||||||||| |||||| | ||| ||| |||| | Sbjct 49994 TTAGCTACCTTAAGAGAGTCATAGTTACTCCCGCTATTTACCTACACTTAGTTAAATTAC 49935 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 |||||||| ||||| |||| ||| ||||||||||||||| ||| |||| |||||||| Sbjct 49934 TTCACTTTAACATTTAGAGTACTAGGCAGAAATCACATTACGTTAACACCACTTTCT 49878 Score = 443 bits (490), Expect = 7e-122 Identities = 422/537 (79%), Gaps = 7/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||| ||||| || || |||||||| ||||||| ||||||| Sbjct 59185 CTTTTGTTCTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAAGACACCTACGTTATG 59126 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||| |||| |||||||| ||| |||||||| |||| | ||| || |||||| | || Sbjct 59125 GTTTAATAGATATGCCGCCCTAGCTAAACTCCCTACCTAATAATATCTTCAACCTAGGTC 59066 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGA-CCAGTTCCGCTTCATTG 185 |||| ||||||||||| |||||| | | | | | | |||| | ||| ||| Sbjct 59065 GGCCTATAAAGGACCTTAAAACCAGAA---GTTAGATATAAATCCAGCCCTACTTTATTA 59009 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | ||||||||||||| ||| | ||||| |||||||||| |||| || ||||| || | Sbjct 59008 AATAAGTAAAAAAACAATAGGAGTAGTAGTATTTCACTAGCGCTAAA---GCTCCTACCT 58952 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 |||||| |||||| | ||| ||| | || || |||||||| ||||| || |||||||| Sbjct 58951 ATTCTATACCTCTTATGTCTTTTTATAATATCAAACTAGAGTTAAGCTTAATAGGGTCTT 58892 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| || |||| | ||||| ||||||| ||| | |||| |||||||||||||| Sbjct 58891 CTTTCCCTACTAATTCTACTAAGCCTATTCCCTTAGCTATAGTTTTGCTAGATAGTAGAT 58832 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||| ||| ||||||| |||||| ||| || |||||||||||||||| || ||| || Sbjct 58831 AGGGATAGTAGGAATCTTATTAATCTATTTATATGCGTCACTAATTAGATAACAAGGTAT 58772 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 || |||||||||||||||| ||||||||||| | |||||| |||| ||| |||| | Sbjct 58771 TTAGCTACCTTAAGAGAGTTATAGTTACTCCTGTTATTTACCTATGCTTAGTTAAATTAC 58712 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 || ||||| | ||| |||| ||| ||||||||||| ||| ||| |||| ||||||| Sbjct 58711 TTTACTTTAATATTTAGAGTACTAGGCAGAAATCATATTACGTTAACACTACTTTCT 58655 Score = 430 bits (476), Expect = 4e-118 Identities = 418/536 (78%), Gaps = 5/536 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||| ||||||||| ||||| || || |||||||||||||||| ||||| Sbjct 41483 CTTTTATTCTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAGGACACCTATATTATG 41424 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||| |||| ||| ||| ||| |||||||| |||| | ||| || | |||| | || Sbjct 41423 GTTTAATAGATATGCTACCCTAGCTAAACTCCCTACCTAATAATATCTTTAACCTAGGTC 41364 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||| | ||||||||||| |||||| | | || || |||| | |||| ||| | Sbjct 41363 GGCCTGTAAAGGACCTTAAAACCAGAAGTTAGACGT--AAATCCAGCCCTGCTTTATTAA 41306 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||| |||||| ||| |||| || ||||| || || Sbjct 41305 ATAAGTAAAAAAACAATAGGAGTAGTAGTATTTTACTAGCGCTAAA---GCTCCTACCTA 41249 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | || ||| | || || |||||||| |||||||| ||||||||| Sbjct 41248 TTCTACACCTCCTATATCTTTTTATAATATCAAACTAGAGTTAAGCTCAATAGGGTCTTC 41189 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||| || |||| | ||||| ||||||| ||||| |||| ||||||||||||||| Sbjct 41188 TTTCCCTACTAATTCTACTAAGCCTATTCCCTTAGCTGTAGTTTTGCTAGATAGTAGATA 41129 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||| ||| ||||||| |||||| ||| || | | ||||||||||| | ||||||| Sbjct 41128 GGGATAGTAGGAATCTTATTAATCTATTTATACATATTACTAATTAGATAATAAGGCATT 41069 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 | |||||||||||||||| |||||||||||||| |||||| ||| ||| |||| || Sbjct 41068 TAGCTACCTTAAGAGAGTTATAGTTACTCCCGCTATTTACCTATACTTAGTTAAATTACT 41009 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 | ||||| | ||| |||| ||| ||||||||||| ||| ||| |||| |||||||| Sbjct 41008 TTACTTTAATATTTAGAGTACTAGGCAGAAATCATATTACGTTAACACCACTTTCT 40953 Score = 412 bits (456), Expect = 1e-112 Identities = 414/536 (77%), Gaps = 5/536 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||| ||||| || || |||||||||||||||| ||||| Sbjct 32173 CTTTTGTTCTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAGGACACCTATGTTATA 32114 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||| ||||||||||||| ||| |||||||| |||| | ||| || | |||| | || Sbjct 32113 GTTTAATAGATGTGCCGCCCTAGCTAAACTCCCTACCTAATAATATCTTTAACCTAGGTC 32054 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||| ||||||||||| | |||| | | | || |||| |||||| ||| | Sbjct 32053 GGCCTATAAAGGACCTTAAAACTAGAAGTTAGACAT--AAATCCAGCCCCGCTTTATTAA 31996 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||| |||||| ||| | | || ||||| || || Sbjct 31995 ATAAGTAAAAAAACAATAGGAGTAGTAGTATTTTACTAGTACTAAA---GCTCCTACCTA 31939 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||| |||||| | ||| ||| | || | |||||||| ||||| || ||||||||| Sbjct 31938 TTCTATACCTCTTATGTCTTTTTATAATATTAAACTAGAGTTAAGCTTAATAGGGTCTTC 31879 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||| || |||| | ||||| ||||||| ||| | |||| |||||||||||||| Sbjct 31878 TTTCCCTACTAATTCTACTAAGCCTATTCCCTTAGCTATAGTTTTACTAGATAGTAGATA 31819 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 ||| ||| ||||||| ||||||| ||| || ||||| ||||||||||| | ||| ||| Sbjct 31818 AGGATAGTAGGAATCTTGTTAATCTATTTATACGCGTTACTAATTAGATAATAAGGTATT 31759 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 | |||||||||||||||| ||||||||||| | |||||| ||| ||| |||| || Sbjct 31758 TAGCTACCTTAAGAGAGTTATAGTTACTCCTACTATTTACCTATACTTAGTTAAATTACT 31699 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 | ||||| | ||| |||||||| || |||||||| ||| ||| |||| ||||||| Sbjct 31698 TTACTTTAATATTTAGAGCACTAGGTAGAAATCATATTACGTTAACACTACTTTCT 31643 Score = 331 bits (366), Expect = 3e-88 Identities = 397/537 (74%), Gaps = 7/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||| ||||| || || |||||||||||||||| ||||| Sbjct 23274 CTTTTGTTCTACTAGAGATTTCTATTCTCTATAAGCCCCCCTTAGGACACCTATGTTATA 23215 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||| |||| |||||||| ||| |||||||| ||| | ||| || | |||| | | Sbjct 23214 GTTTAATAGATATGCCGCCCTAGCTAAACTCCCTCCCTAATAATATCTTTAACCTAGGTT 23155 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATTG 185 |||| || ||||||| | | || | | | || | | | || | ||| ||| Sbjct 23154 GGCCTATAAAAAACCTTAAAACTAAAA---GTTAGATGTAAATCTAGCCCTACTTTATTA 23098 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | |||||||||||| ||| | ||||| |||||| ||| | | || ||||| || | Sbjct 23097 AATAAGTAAAAAAATAATAGGAGTAGTAGTATTTTACTAGTACTAAA---GCTCCTACCT 23041 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 |||||| |||||| | ||| ||| | || | |||||||| ||||| || |||||||| Sbjct 23040 ATTCTATACCTCTTATGTCTTTTTATAATATTAAACTAGAGTTAAGCTTAATAGGGTCTT 22981 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||| || |||| || ||||| ||||||| ||| | |||| ||||||||||||| Sbjct 22980 CTTTCCTTACTAATTCTGCTAAGCCTATTCCCTTAGCTATAGTTTTACTAGATAGTAGAT 22921 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||| ||| ||||||| |||||| ||| || | |||||||||| | |||||| Sbjct 22920 AGGGATAGTAGGAATCTTATTAATCTATTTATATATATTCCTAATTAGATAATAAGGCAT 22861 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 || |||||||||||||||| ||||||||||| | |||||| ||| ||| |||| | Sbjct 22860 TTAGCTACCTTAAGAGAGTTATAGTTACTCCTACTATTTACCTATACTTAGTTAAATTAC 22801 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 || ||||| | ||| |||| ||| || |||||| | ||| | || | ||||||| Sbjct 22800 TTTACTTTAATATTTAGAGTACTAGGTAGAAATTATATTATATTAATACTACTTTCT 22744 >seq1 Length=2214490 Score = 154 bits (170), Expect = 5e-35 Identities = 113/130 (87%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||| |||||||| ||| | |||| |||||||||||||||||| Sbjct 1946040 CTTTCCCCGCTGATTCTGCCCAGCCCGTTTCCTCAGTTGTGCTTTCGCTAGATAGTAGAT 1946099 Query 366 AGGGACAGTGGGAATCTCG-TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 || ||| |||||||||||| || || |||||||||||||| ||||||| |||| ||||| Sbjct 1946100 AGAGACCGTGGGAATCTCGTTTGATGCATTCATGCGCGTCGCTAATTAAATGAGAAGGCA 1946159 Query 425 TTTGGCTACC 434 ||||||| || Sbjct 1946160 TTTGGCTCCC 1946169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635191039104