Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq207 161 2e-37 >seq207 Length=60267 Score = 161 bits (178), Expect = 2e-37 Identities = 192/256 (75%), Gaps = 12/256 (5%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| |||||| |||| || |||||||||| |||| ||||||||||| Sbjct 59532 ATAATTAGTTTTTATAGCTGTCCGACCGGGTAGTGCCGCGACGCTAGTATCTGCTGGATA 59591 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACAT 146 |||||||||||||||||||| |||||||||||||||||| | ||| | |||| | || | Sbjct 59592 ATGGCTGAACGCCTCTAAGTTAGAATCCATGCCAGAACGTGACGATAC-CTCCCGTACGT 59650 Query 147 CGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC----CGGCAACGGGCG 202 ||| |||||||||||||||||||| | |||||||||| | | || Sbjct 59651 -ATAGATGGATACGAATAGGCTTCGGCTTAGCGTCTTAGCAGGCGATTCCTCTAC----- 59704 Query 203 TCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAA 262 | | |||||| | | | | | | ||| |||| ||||||| | | || ||| ||| Sbjct 59705 TGCTCTTGAAGCGAGTAGTGGT-ATTTCGCGAATTGTAATTTCAGTACGAGCGGGGTTAA 59763 Query 263 ATCCTTTGCAGACGAC 278 |||||||||||||||| Sbjct 59764 ATCCTTTGCAGACGAC 59779 Score = 141 bits (156), Expect = 2e-31 Identities = 133/164 (81%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||||||| || | || ||| ||||||||||||||||||||||||| || ||| | || Sbjct 50736 AGAGGAACTGCTTATTT-AGA-TAATTGGTTTTTGCGGCTGTCTGACTGGGTAGTACTGC 50793 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 || ||||| ||||||||||| |||||||||||||||||||| |||||| |||| |||||| Sbjct 50794 GACGCTACTATCTGCTGGATAATGGCTGAACGCCTCTAAGTTAGAATCTATGCTAGAACG 50853 Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTT 169 | |||| | |||||| || | ||| || | ||||||||| Sbjct 50854 TGATGATAC-CTCCTGTACGT-ATAGATAGACATAAATAGGCTT 50895 Score = 102 bits (112), Expect = 1e-19 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| ||||||| ||||||| ||| || ||| | |||| ||||| |||| || ||| Sbjct 41830 ATAATTAGTTTTTGTGGCTGTCCGACTGGGTAGTACTGCGACGCTACTATCTACTAGATA 41889 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACAT 146 || ||| ||||||||||||| ||||||||| | |||| | | | || | ||||| | || Sbjct 41890 ATAGCTAAACGCCTCTAAGTTAGAATCCATACTAGAATGCGATAATAC-CTCCTATATAT 41948 Query 147 CGTAGTCGGATACGAATAGGCTT 169 ||| ||||| ||||||||| Sbjct 41949 -ATAGATAGATACAAATAGGCTT 41970 Score = 78.8 bits (86), Expect = 2e-12 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| ||||||| ||| ||| ||| || | |||| |||| || ||| Sbjct 32520 ATAATTAGTTTTTATGGCTGTCCGACTAGGTAGTACCATAACACTACTATCTACTAGATA 32579 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAAC 124 || ||| ||||||||||||| ||||| |||| ||||| Sbjct 32580 ATAGCTAAACGCCTCTAAGTTAGAATTTATGCTAGAAC 32617 Score = 75.2 bits (82), Expect = 2e-11 Identities = 104/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||| |||||| ||| || ||| ||| ||| | | ||||| |||| || ||| Sbjct 23621 ATAATTAGTTTTTATAGCTATCCGACTAGGTAGTACTATAACGCTACTATCTACTAGATA 23680 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACAT 146 || ||| ||||||||||||| |||||| || | |||||| | || | |||| ||| || Sbjct 23681 ATAGCTAAACGCCTCTAAGTTAGAATCTATACTAGAACGTAATAATAC-CTCCCGCATAT 23739 Query 147 CGTAGTCGGATACGAATAGGCTT 169 ||| || || ||||||||| Sbjct 23740 -ATAGATAGACACAAATAGGCTT 23761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819195651072