Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11 246 2e-60 seq6 159 3e-34 >seq11 Length=827760 Score = 246 bits (272), Expect = 2e-60 Identities = 552/823 (67%), Gaps = 6/823 (1%) Strand=Plus/Plus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 |||| | |||||| || || ||||| || ||||| | ||||||||| |||| ||||| | Sbjct 610225 TGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAA 610284 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 || || ||||| || || || || ||||| |||| |||| || || || |||| Sbjct 610285 TGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGC 610344 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | ||| ||||||||||| | |||| | || |||| ||||| ||| | ||| | || Sbjct 610345 GGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGA 610404 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAA 66238 |||| | ||| || | ||||| | || | | | |||| || | ||||||| Sbjct 610405 TGGCATACCAGAGCTTTTGGGCCTTAAGAGT-CTTGCGACCCTTGCCCATCTGTTCGTAC 610463 Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298 | ||||| | | ||||| ||||| | |||| |||| || |||| | Sbjct 610464 TTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTG 610523 Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 || ||||| || | ||| || || | || |||||| | ||| || |||||||| ||| Sbjct 610524 GGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATC 610583 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || || ||| || || || || || ||| || |||| || || || |||| Sbjct 610584 CAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGA 610643 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || | || || |||| ||||| ||||| || || || |||||||| || | || | Sbjct 610644 TCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGA 610703 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || ||| |||||| ||||||||||| ||||| || || |||||||| | ||| || Sbjct 610704 CGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGA 610763 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 |||| ||||| || |||||||||||||| | ||| || || || || || | Sbjct 610764 ACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGG 610823 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTG 66656 || || || |||||||| ||||| ||| |||| ||||| || || || | || Sbjct 610824 TGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTG 610883 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 || | | || || || || ||||| | || ||| | ||| |||| ||| || | Sbjct 610884 TC--GTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCT 610941 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | | || ||| || | || |||||| || || | ||||| || ||| | | || | Sbjct 610942 GTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCG 611001 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819 |||| ||||| ||||||||||| |||| ||| || || Sbjct 611002 ACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACC 611044 Score = 122 bits (134), Expect = 7e-23 Identities = 331/496 (67%), Gaps = 18/496 (4%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | |||||| |||| || | || ||||||||||| ||| Sbjct 609321 TCGACGGTGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTC 609380 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 || || || ||| ||| || ||| ||||| | || | || |||| | | |||| | Sbjct 609381 TTCAGACCGAGC-TTCCAGCCAGCGAAGTGCAT-GCTGGTGATCTTGCCCATAGTCGGGT 609438 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || || | ||||| ||| |||||| | |||||| || ||||||| Sbjct 609439 CCTTCATGTGGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCA 609498 Query 65256 TGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACC 65311 | | ||| | |||| | || || ||||| || |||||||||| | | | ||| Sbjct 609499 TCTGTACAACGGTACGCTG---GGAGATTTCCCAAACAGTCTTGTACA-ATGCCTTCACC 609554 Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371 || | ||||| | |||| ||||| ||||| ||||| || || || | Sbjct 609555 TCGGTAGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCAATGATACGGTTCTTC 609614 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGAC---GATTGATG 65428 || | || ||||||| ||||| |||| || | | |||| | | | |||| | Sbjct 609615 ATAGCATCGGACCACAGACCCATGTCGACGAGGTCCT---TCAAGAGCCATGGGTTGACG 609671 Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 ||||| |||||||| | || |||||||| || |||||||| ||| ||| || ||| Sbjct 609672 ACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAG 609731 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 | ||| ||||||| | || || | || ||||| |||||||| ||||| | || Sbjct 609732 CACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGA 609791 Query 65549 GAGTTTCGCAATCCGT 65564 ||||| || | |||| Sbjct 609792 GAGTTGCGGACACCGT 609807 >seq6 Length=1110370 Score = 159 bits (176), Expect = 3e-34 Identities = 222/307 (72%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || ||||| |||||||| | |||||| | ||| || Sbjct 70634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 70693 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 || || ||| || | |||||| | | | | ||| | ||| | | ||||| Sbjct 70694 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAG-GATGAGAAGTACTTCATCTC 70752 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| |||||||| ||||| |||||||||||||| || | || || Sbjct 70753 GCACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCG 70812 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| ||| ||||| |||||| | ||||| || || |||||||||||||||||| | Sbjct 70813 CTTCAGCG-GCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGA 70871 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| || Sbjct 70872 TGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGAGCCGG 70931 Query 61382 CGGAACG 61388 | |||| Sbjct 70932 CCCAACG 70938 Score = 111 bits (122), Expect = 1e-19 Identities = 330/503 (66%), Gaps = 11/503 (2%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||| || || |||||| |||| ||||| | | | | | | | || | | | || || Sbjct 71043 GAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCTCAGCGTTT 71102 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | | || || || | ||||||||| | || |||||||| | || ||| | ||||| || Sbjct 71103 GGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTG 71162 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | ||||| || || || |||||||||||||| ||| ||| ||| | || || || || Sbjct 71163 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCGTGA 71222 Query 61614 CGAGGGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATCG 61670 |||||| |||| || || | ||| | || || || | | || ||| || Sbjct 71223 CGAGGGTCTGCACACCGACTTCGCCTGCCTCCTG-TACTC-----CCACCTCAAGAACCG 71276 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730 || || || | | | || || || || || || | || || ||||| || Sbjct 71277 CCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAGTT 71336 Query 61731 TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTA 61790 ||||| || || | || | | || | |||||||| | || ||| |||||| Sbjct 71337 CCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTA 71396 Query 61791 TATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATA 61849 ||||| || || |||||||| || ||||| | | |||| | || || | || || Sbjct 71397 CATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCTCTTGGCAACGACAAGG-TTTACAAGT 71455 Query 61850 CGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG 61909 | ||||| || || || ||||| | || || |||| ||||||||| || || || | Sbjct 71456 CTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTCTTTG 71515 Query 61910 AGAAACGTGTAGGCGACTATCAA 61932 | || ||||| | |||||| ||| Sbjct 71516 AAAAGCGTGTTGCCGACTACCAA 71538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565344742720