Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq11 246 2e-60
seq6 159 3e-34
>seq11
Length=827760
Score = 246 bits (272), Expect = 2e-60
Identities = 552/823 (67%), Gaps = 6/823 (1%)
Strand=Plus/Plus
Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059
|||| | |||||| || || ||||| || ||||| | ||||||||| |||| ||||| |
Sbjct 610225 TGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAA 610284
Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119
|| || ||||| || || || || ||||| |||| |||| || || || ||||
Sbjct 610285 TGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGC 610344
Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179
| ||| ||||||||||| | |||| | || |||| ||||| ||| | ||| | ||
Sbjct 610345 GGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGA 610404
Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAA 66238
|||| | ||| || | ||||| | || | | | |||| || | |||||||
Sbjct 610405 TGGCATACCAGAGCTTTTGGGCCTTAAGAGT-CTTGCGACCCTTGCCCATCTGTTCGTAC 610463
Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298
| ||||| | | ||||| ||||| | |||| |||| || |||| |
Sbjct 610464 TTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTG 610523
Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358
|| ||||| || | ||| || || | || |||||| | ||| || |||||||| |||
Sbjct 610524 GGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATC 610583
Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418
|| || || ||| || || || || || ||| || |||| || || || ||||
Sbjct 610584 CAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGA 610643
Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478
|| | || || |||| ||||| ||||| || || || |||||||| || | || |
Sbjct 610644 TCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGA 610703
Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538
|| ||| |||||| ||||||||||| ||||| || || |||||||| | ||| ||
Sbjct 610704 CGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGA 610763
Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598
|||| ||||| || |||||||||||||| | ||| || || || || || |
Sbjct 610764 ACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGG 610823
Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTG 66656
|| || || |||||||| ||||| ||| |||| ||||| || || || | ||
Sbjct 610824 TGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTG 610883
Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716
|| | | || || || || ||||| | || ||| | ||| |||| ||| || |
Sbjct 610884 TC--GTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCT 610941
Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776
| | || ||| || | || |||||| || || | ||||| || ||| | | || |
Sbjct 610942 GTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCG 611001
Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819
|||| ||||| ||||||||||| |||| ||| || ||
Sbjct 611002 ACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACC 611044
Score = 122 bits (134), Expect = 7e-23
Identities = 331/496 (67%), Gaps = 18/496 (4%)
Strand=Plus/Plus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
||||| |||||||| || | |||||| |||| || | || ||||||||||| |||
Sbjct 609321 TCGACGGTGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTC 609380
Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195
|| || || ||| ||| || ||| ||||| | || | || |||| | | |||| |
Sbjct 609381 TTCAGACCGAGC-TTCCAGCCAGCGAAGTGCAT-GCTGGTGATCTTGCCCATAGTCGGGT 609438
Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255
| || || || || | ||||| ||| |||||| | |||||| || |||||||
Sbjct 609439 CCTTCATGTGGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCA 609498
Query 65256 TGT---CAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACC 65311
| | ||| | |||| | || || ||||| || |||||||||| | | | |||
Sbjct 609499 TCTGTACAACGGTACGCTG---GGAGATTTCCCAAACAGTCTTGTACA-ATGCCTTCACC 609554
Query 65312 TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371
|| | ||||| | |||| ||||| ||||| ||||| || || || |
Sbjct 609555 TCGGTAGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCAATGATACGGTTCTTC 609614
Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGAC---GATTGATG 65428
|| | || ||||||| ||||| |||| || | | |||| | | | |||| |
Sbjct 609615 ATAGCATCGGACCACAGACCCATGTCGACGAGGTCCT---TCAAGAGCCATGGGTTGACG 609671
Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488
||||| |||||||| | || |||||||| || |||||||| ||| ||| || |||
Sbjct 609672 ACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAG 609731
Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548
| ||| ||||||| | || || | || ||||| |||||||| ||||| | ||
Sbjct 609732 CACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGA 609791
Query 65549 GAGTTTCGCAATCCGT 65564
||||| || | ||||
Sbjct 609792 GAGTTGCGGACACCGT 609807
>seq6
Length=1110370
Score = 159 bits (176), Expect = 3e-34
Identities = 222/307 (72%), Gaps = 7/307 (2%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||| ||||| || ||||| |||||||| | |||||| | ||| ||
Sbjct 70634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 70693
Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202
|| || ||| || | |||||| | | | | ||| | ||| | | |||||
Sbjct 70694 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAG-GATGAGAAGTACTTCATCTC 70752
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | | || ||||| |||||||| ||||| |||||||||||||| || | || ||
Sbjct 70753 GCACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCG 70812
Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| ||| ||||| |||||| | ||||| || || |||||||||||||||||| |
Sbjct 70813 CTTCAGCG-GCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGA 70871
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
||||||| ||||||| |||| ||| | ||||| || || ||||||| ||||| ||
Sbjct 70872 TGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGAGCCGG 70931
Query 61382 CGGAACG 61388
| ||||
Sbjct 70932 CCCAACG 70938
Score = 111 bits (122), Expect = 1e-19
Identities = 330/503 (66%), Gaps = 11/503 (2%)
Strand=Plus/Plus
Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493
||| || || |||||| |||| ||||| | | | | | | | || | | | || ||
Sbjct 71043 GAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCTCAGCGTTT 71102
Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553
| | || || || | ||||||||| | || |||||||| | || ||| | ||||| ||
Sbjct 71103 GGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTG 71162
Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613
| | ||||| || || || |||||||||||||| ||| ||| ||| | || || || ||
Sbjct 71163 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCGTGA 71222
Query 61614 CGAGGGCATGCATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCTATCTGGTGAATCG 61670
|||||| |||| || || | ||| | || || || | | || ||| ||
Sbjct 71223 CGAGGGTCTGCACACCGACTTCGCCTGCCTCCTG-TACTC-----CCACCTCAAGAACCG 71276
Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730
|| || || | | | || || || || || || | || || ||||| ||
Sbjct 71277 CCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAGTT 71336
Query 61731 TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTA 61790
||||| || || | || | | || | |||||||| | || ||| ||||||
Sbjct 71337 CCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTA 71396
Query 61791 TATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATA 61849
||||| || || |||||||| || ||||| | | |||| | || || | || ||
Sbjct 71397 CATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCTCTTGGCAACGACAAGG-TTTACAAGT 71455
Query 61850 CGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG 61909
| ||||| || || || ||||| | || || |||| ||||||||| || || || |
Sbjct 71456 CTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTCTTTG 71515
Query 61910 AGAAACGTGTAGGCGACTATCAA 61932
| || ||||| | |||||| |||
Sbjct 71516 AAAAGCGTGTTGCCGACTACCAA 71538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397565344742720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |