Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq1155 134 3e-29
>seq1155
Length=26199
Score = 134 bits (148), Expect = 3e-29
Identities = 201/285 (71%), Gaps = 18/285 (6%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| |||| |||| ||||| ||| ||||||||||||||| | ||||||||
Sbjct 9358 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGT 9417
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|||||||| ||||| |||| | | | | ||| | | ||||| |||||||||||||||||
Sbjct 9418 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 9477
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC----------TTCGC 176
|| | | |||| ||||||| || ||||||| ||| |||| | | ||
Sbjct 9478 CCCTCA-CGTTAAGGCCGCCATTAACCGGGGGTTCCTTCAACACCAAATTTTTTGATCAA 9536
Query 177 GTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCC 236
|||| ||| || |||||| |||||| ||||||| | |||||| | |||| ||
Sbjct 9537 TTTAGTTAA----ATTCGTTAACCAGCCGGCATCGGGCAGACATCACACTCAATACTTCG 9592
Query 237 ACTTT---CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
| ||| | || ||| ||||||||||||| | ||||||||||
Sbjct 9593 ATTTTTAATCTTTTAGCAAAGTGCTGTGTTTTAATTAAACAGTCG 9637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260783609600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |