Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq648 792 0.0 seq751 181 3e-43 seq1055 87.8 6e-15 >seq648 Length=99951 Score = 792 bits (878), Expect = 0.0 Identities = 499/537 (93%), Gaps = 5/537 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 734 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 793 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 794 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 853 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| || || |||| |||||||||||| Sbjct 854 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 911 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 912 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 968 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 969 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 1028 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1029 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 1088 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1089 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 1148 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1149 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 1208 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1209 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1265 Score = 156 bits (172), Expect = 1e-35 Identities = 357/536 (67%), Gaps = 5/536 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| | ||| || ||| | ||||| || || || | ||| || || | |||||| Sbjct 8691 CTTTTGTTTTACTAAAGGTTTTTATTCTCTATAAGCCCTCTTTAAGATACTTACGTTATA 8750 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||| | || | | | ||| ||||| | || | | ||| || | |||| | | Sbjct 8751 GTTTAATAAATATACTATCTTAGCTAAACTTTCTACTTAATAATATCTTTAACCTAGGTT 8810 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 || || |||||||| | | || | | || || | || || ||| | Sbjct 8811 AGCTTATAAAAGACCTTAAAACTAAAAGTTAGACGT--AAATCTAGCCTTATTTTATTAA 8868 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||| | |||| ||||| |||||| ||| | || ||| ||||| Sbjct 8869 ATAAGTAAAAAGATAATAAAAGTAGTAGTATTTTACTAATACTAAA---GCTTTTACTTA 8925 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 || || || | | || ||| | || | |||| ||| ||||| || | |||||| Sbjct 8926 TTTTATACTTTCTATATCTTTTTATAATATTAAACTAAAGTTAAGCTTAATAAGGTCTTT 8985 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||| | || ||| || ||||| ||| ||| ||| | |||| ||| |||||| ||| Sbjct 8986 TTTTCTTACTAATTTTGCTAAGCCTGTTTTCTTAGCTATAGTTTTACTAAATAGTAAATA 9045 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 | || ||| ||||||| ||||| ||| || ||| ||||||||||| | ||| ||| Sbjct 9046 GAGATAGTAGGAATCTTATTAATTTATTTATATACGTTACTAATTAGATAATAAGGTATT 9105 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 | |||||||||||| ||| ||||||||| | ||||| ||| ||| |||| || Sbjct 9106 TAGCTACCTTAAGAAAGTTATAGTTACTTTTACTATTTACTTATACTTAGTTAAATTACT 9165 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 | ||||| | ||| | || ||| | |||||| | ||| || |||| ||||||| Sbjct 9166 TTACTTTAATATTTAAAGTACTAGATAGAAATTATATTATGTTAACACTACTTTCT 9221 >seq751 Length=99891 Score = 181 bits (200), Expect = 3e-43 Identities = 178/228 (78%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATT 248 ||||| |||| ||| | ||| | |||||| | |||||| ||||| || ||| Sbjct 66104 AAGTAGGAAAATAATAGAAGGAGTATTGTTTCACCGGAGCCGAA---GCTCCTACCTATC 66048 Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 |||||| | | | |||| | ||| | ||| ||||||| ||||||||||||||| Sbjct 66047 CTACACATACTGTGACTTTTCGTAGTGTCAAATTAGGGTCAAGCGCAACAGGGTCTTCTT 65988 Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 |||||| |||||| |||||||| || |||||||||||| |||||||| ||||||||||| Sbjct 65987 TCCCCGTTGATTCTGCCAAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGA 65928 Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||| |||||||| |||||||||||| |||||| Sbjct 65927 AGCAGTGGGAATCTCGTTGGTCCATTCAGGCGCGTCACTAA-TAGATG 65881 >seq1055 Length=282330 Score = 87.8 bits (96), Expect = 6e-15 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 ||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 16848 TTTTGTTCTACTGGAGATTTCTGTTCTCCGTGAGCCCCCCTTAGGACACCTGCGTTAT 16905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635178742400