Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016-
04-12] 1,300 sequences; 52,962,735 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq648 792 0.0
seq751 181 3e-43
seq1055 87.8 6e-15
>seq648
Length=99951
Score = 792 bits (878), Expect = 0.0
Identities = 499/537 (93%), Gaps = 5/537 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 734 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 793
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 794 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 853
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| || || |||| ||||||||||||
Sbjct 854 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 911
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 912 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 968
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 969 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 1028
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 1088
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 1148
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1149 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 1208
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1209 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 1265
Score = 156 bits (172), Expect = 1e-35
Identities = 357/536 (67%), Gaps = 5/536 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| | ||| || ||| | ||||| || || || | ||| || || | ||||||
Sbjct 8691 CTTTTGTTTTACTAAAGGTTTTTATTCTCTATAAGCCCTCTTTAAGATACTTACGTTATA 8750
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||| | || | | | ||| ||||| | || | | ||| || | |||| | |
Sbjct 8751 GTTTAATAAATATACTATCTTAGCTAAACTTTCTACTTAATAATATCTTTAACCTAGGTT 8810
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|| || |||||||| | | || | | || || | || || ||| |
Sbjct 8811 AGCTTATAAAAGACCTTAAAACTAAAAGTTAGACGT--AAATCTAGCCTTATTTTATTAA 8868
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
|||||||||| | |||| ||||| |||||| ||| | || ||| |||||
Sbjct 8869 ATAAGTAAAAAGATAATAAAAGTAGTAGTATTTTACTAATACTAAA---GCTTTTACTTA 8925
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
|| || || | | || ||| | || | |||| ||| ||||| || | ||||||
Sbjct 8926 TTTTATACTTTCTATATCTTTTTATAATATTAAACTAAAGTTAAGCTTAATAAGGTCTTT 8985
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||| | || ||| || ||||| ||| ||| ||| | |||| ||| |||||| |||
Sbjct 8986 TTTTCTTACTAATTTTGCTAAGCCTGTTTTCTTAGCTATAGTTTTACTAAATAGTAAATA 9045
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
| || ||| ||||||| ||||| ||| || ||| ||||||||||| | ||| |||
Sbjct 9046 GAGATAGTAGGAATCTTATTAATTTATTTATATACGTTACTAATTAGATAATAAGGTATT 9105
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
| |||||||||||| ||| ||||||||| | ||||| ||| ||| |||| ||
Sbjct 9106 TAGCTACCTTAAGAAAGTTATAGTTACTTTTACTATTTACTTATACTTAGTTAAATTACT 9165
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
| ||||| | ||| | || ||| | |||||| | ||| || |||| |||||||
Sbjct 9166 TTACTTTAATATTTAAAGTACTAGATAGAAATTATATTATGTTAACACTACTTTCT 9221
>seq751
Length=99891
Score = 181 bits (200), Expect = 3e-43
Identities = 178/228 (78%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATT 248
||||| |||| ||| | ||| | |||||| | |||||| ||||| || |||
Sbjct 66104 AAGTAGGAAAATAATAGAAGGAGTATTGTTTCACCGGAGCCGAA---GCTCCTACCTATC 66048
Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308
|||||| | | | |||| | ||| | ||| ||||||| |||||||||||||||
Sbjct 66047 CTACACATACTGTGACTTTTCGTAGTGTCAAATTAGGGTCAAGCGCAACAGGGTCTTCTT 65988
Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368
|||||| |||||| |||||||| || |||||||||||| |||||||| |||||||||||
Sbjct 65987 TCCCCGTTGATTCTGCCAAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGA 65928
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 65927 AGCAGTGGGAATCTCGTTGGTCCATTCAGGCGCGTCACTAA-TAGATG 65881
>seq1055
Length=282330
Score = 87.8 bits (96), Expect = 6e-15
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65
||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 16848 TTTTGTTCTACTGGAGATTTCTGTTCTCCGTGAGCCCCCCTTAGGACACCTGCGTTAT 16905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635178742400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |