Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618705.1_202016- 04-12] 1,300 sequences; 52,962,735 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq648 219 7e-55 >seq648 Length=99951 Score = 219 bits (242), Expect = 7e-55 Identities = 220/278 (79%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 411 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 354 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 353 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 294 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | ||| | |||| |||| | || ||| |||||||||||||||| | Sbjct 293 GAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTCGGCTTAGCGT 236 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 ||||||||| || || | | |||||| | | | | | | ||| |||| | Sbjct 235 CTTAGCAGG-CGATTACTCCACTGCTCTCGAAGCGAGTAGTGGT-ATTTCGCGAATTGTA 178 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| || | || ||| |||||||||||||||||| Sbjct 177 ATTTCAGCACGAGCGGGGTCAAATCCTTTGCAGACGAC 140 Score = 105 bits (116), Expect = 1e-20 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||| |||||| | || ||| ||||| |||||||| ||| | | || ||||||| Sbjct 8368 GTACAAGAGAAACCGCTTATTT-AGA-TAATTAGTTTTTGCAGCTATTTAACTAGGCAGT 8311 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 || || | ||||| |||| || ||| || ||| ||||||||||||| |||||| |||| | Sbjct 8310 GCTGCAACGCTACTATCTACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCTA 8251 Query 121 GAACG 125 ||||| Sbjct 8250 GAACG 8246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819189683200