Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq222 172 3e-41
seq766 82.4 4e-14
>seq222
Length=6087
Score = 172 bits (190), Expect = 3e-41
Identities = 109/117 (93%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|| ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 2395 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 2337
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2336 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 2280
>seq766
Length=86199
Score = 82.4 bits (90), Expect = 4e-14
Identities = 83/107 (78%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70
||||| |||||| |||||||| | ||| |||| ||||||| | | ||| |||||
Sbjct 81223 ACTTTAATTTCTTATAAGGTGCTAAATAAGTTAAAAA-ATAACATTGTCTAATCTCTAGT 81165
Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
| |||||||| ||||||||||||||||||||| || ||||| ||
Sbjct 81164 TAGTATAGTTTATAGTTAAGACTACGACGGTATCTAATTGTCTTTGA 81118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278397935490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |