Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq222 482 4e-134 seq766 269 5e-70 >seq222 Length=6087 Score = 482 bits (534), Expect = 4e-134 Identities = 296/314 (94%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| Sbjct 1966 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGA 2025 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 2026 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 2085 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2086 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 2145 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2146 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 2205 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| || Sbjct 2206 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GA 2264 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 2265 ACGAAAGTTAGGGG 2278 >seq766 Length=86199 Score = 269 bits (298), Expect = 5e-70 Identities = 241/301 (80%), Gaps = 1/301 (0%) Strand=Plus/Plus Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75 |||||||| ||| || | |||| || |||||| ||| | | | || ||||||||| Sbjct 80815 GGCCTTTCTCTCTATAGAACTGCATACCTTTCACTAGGTATACTAGAGAAACAGGACTTT 80874 Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 |||||| |||||||||||||| || | |||||||| | || ||||||||||||| |||| Sbjct 80875 TACTTTAAAAAAATTAGAGTGCTCCAGGCAGGCCTATACTTAAATACATTAGCATAGAAT 80934 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 |||| |||| ||||| ||||||||||||| ||||||| |||||| |||| ||||||| Sbjct 80935 AATAAAATAAGACGTATAGTTCTATTTTGTTAGTTTCTAAAACCGCCATAATAATTAATA 80994 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 ||| ||| | || | |||||| |||| | |||||| |||||||| |||||||| ||| Sbjct 80995 AGGACAGTTAGAGGCATTAGTATTTAATTATTAGAGGTAAAATTCTTAGATTTATTAAAG 81054 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||||||||| |||| || || ||| ||||||||||| || || |||| |||||||| Sbjct 81055 ACTAACTACTGCAAAAGTATTTACTAAGAATGTTTTCATTTATTAG-GAACAAAAGTTAG 81113 Query 316 G 316 | Sbjct 81114 G 81114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915192760768