Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq222 713 0.0 seq766 295 3e-77 >seq222 Length=6087 Score = 713 bits (790), Expect = 0.0 Identities = 561/664 (84%), Gaps = 12/664 (2%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||| || Sbjct 3819 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATAT 3878 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3879 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 3938 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||| Sbjct 3939 TGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTT 3998 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCGG 261 | ||||||||||| | | || ||| || || | | |||| || ||||| | | | | Sbjct 3999 GTGACCAGACTTGCGCCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTTGCCG-GC 4057 Query 262 TCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319 |||||||||||||||| | | ||| ||| ||| || | |||| || || | ||||| Sbjct 4058 ACAGGCCAGCATCAGCTTGCCGTCGG--GGACAAAAGCTTCAGGAACGTAGCTCTCTTCG 4115 Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379 ||| ||||||||||| | | ||| | || | || ||||||| |||||||| || Sbjct 4116 GGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGC-GGGCTGAGGTACGCGCTCC-GCA 4173 Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||||||||||||||||||| | |||| ||||||||| |||||||||||||||||| | | Sbjct 4174 AGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACC 4233 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 | | ||||||||||||||||| |||||| | ||||||||||||||||||| ||||| || Sbjct 4234 TTATGTGCGAGTGTTTGGGTGTTAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA 4293 Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559 | || ||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 4294 ----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 4349 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 || | | |||||||||||| |||||||||||| || |||||||||||||||||||||| Sbjct 4350 TATAGGGTTGGACCCGAAAGAAGGTGAACTATGCGTGTATAGGGTGAAGCCAGAGGAAAC 4409 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||||||||||||||||||||||||| ||||||||||||||||||||| || | || ||| Sbjct 4410 TCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGCGCATGGGG 4469 Query 680 GCGA 683 |||| Sbjct 4470 GCGA 4473 >seq766 Length=86199 Score = 295 bits (326), Expect = 3e-77 Identities = 469/659 (71%), Gaps = 14/659 (2%) Strand=Plus/Plus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||||||| | ||| ||| |||| |||||| ||| |||| |||||| |||||| Sbjct 82661 AAGCTCCTTTAATAAGTTAAGTAGTTTAAGAATGCTGCTTAAAATAAGAGGTATATTTCT 82720 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||||| || |||||| |||||||| ||||| ||| || |||||| || Sbjct 82721 TCTAAAGCTAAATATTAGCTAGAGACTAATAGCGCATAAGTAAAGTAATTAAAAGATAAA 82780 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||||||||| |||||| |||||| ||||||| ||||| || |||| ||||||||| || Sbjct 82781 AAGCACTTTAAAAAGAGGGTTAAATAGCACGTAAAATTATTAAAAGAGAAGCGCTTATAA 82840 Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT-CGGCCGGTGCACTCTTCTGCGGTCAG 265 | |||||| | | ||| | | | || | | |||| ||||| | || | || Sbjct 82841 CTAGACTTACGCCTAGTAAATTACCTAGCTCTTGCGGCTAAGGCACTTTGCT-AGCATAG 82899 Query 266 GCCAGCATCAGCTCGGGCGGTCG-GATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGG 324 |||||||| |||| | || | | | ||| || | || | || ||| || | Sbjct 82900 GCCAGCATTAGCT-TGCCGTTAGAAACAAAAGCTTTAGAAACATAGCTTTCTTTAGGAAG 82958 Query 325 TGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGAT 384 | |||||||| | | ||| | | || || |||| |||||||| | || || Sbjct 82959 TATTATAGCCTGTTGCATAATACCCTTTAGCAGG-CTAAGGTACGCGCTCC-GTAAGAAT 83016 Query 385 GCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTA 444 ||| || |||| ||| | || || ||||| ||||| ||| ||||||| |||| | || Sbjct 83017 GCTAGCATAATAGTTATTAGTAACCTGTCTTAAAACACAGACTAAGGAGT-TAACCT-TA 83074 Query 445 TGCG--AGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC 502 || | ||| ||| ||| | |||||| | |||||||| ||||| |||| |||| || Sbjct 83075 TGTGTAAGTATTTAGGTATTAAACCCCTACGCGTAATAAAAGTAAACGTAGGTAAGA--G 83132 Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562 | | || || | || || ||||| |||| || ||| ||||| |||||||| ||| Sbjct 83133 CTTTAGCGT--ATTATTAACTAATCCTAATGTTCTCAGATAGATTTAAGTAAGAGTATAT 83190 Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 | | |||| ||||| ||| |||||||| || ||||||||||||||||||||||||| Sbjct 83191 AGGGTTAGACCTAAAAGAAGGTAAACTATGCATGTATAGGGTGAAGCCAGAGGAAACTCT 83250 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || ||||| |||| ||||| ||| ||||| || | |||| || | ||| |||| Sbjct 83251 AGTAAAGGCTTACAGCAGTTCTAACGTATAAATCAATTATTAAATATGCGCATAAGGGC 83309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079983033050