Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq222 713 0.0
seq766 295 3e-77
>seq222
Length=6087
Score = 713 bits (790), Expect = 0.0
Identities = 561/664 (84%), Gaps = 12/664 (2%)
Strand=Plus/Plus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||
Sbjct 3819 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATAT 3878
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3879 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 3938
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 3939 TGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTT 3998
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCGG 261
| ||||||||||| | | || ||| || || | | |||| || ||||| | | | |
Sbjct 3999 GTGACCAGACTTGCGCCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTTGCCG-GC 4057
Query 262 TCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319
|||||||||||||||| | | ||| ||| ||| || | |||| || || | |||||
Sbjct 4058 ACAGGCCAGCATCAGCTTGCCGTCGG--GGACAAAAGCTTCAGGAACGTAGCTCTCTTCG 4115
Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379
||| ||||||||||| | | ||| | || | || ||||||| |||||||| ||
Sbjct 4116 GGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGC-GGGCTGAGGTACGCGCTCC-GCA 4173
Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439
||||||||||||||||||| | |||| ||||||||| |||||||||||||||||| | |
Sbjct 4174 AGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACC 4233
Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499
| | ||||||||||||||||| |||||| | ||||||||||||||||||| ||||| ||
Sbjct 4234 TTATGTGCGAGTGTTTGGGTGTTAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA 4293
Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559
| || ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4294 ----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 4349
Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619
|| | | |||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 4350 TATAGGGTTGGACCCGAAAGAAGGTGAACTATGCGTGTATAGGGTGAAGCCAGAGGAAAC 4409
Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
|||||||||||||||||||||||||| ||||||||||||||||||||| || | || |||
Sbjct 4410 TCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGCGCATGGGG 4469
Query 680 GCGA 683
||||
Sbjct 4470 GCGA 4473
>seq766
Length=86199
Score = 295 bits (326), Expect = 3e-77
Identities = 469/659 (71%), Gaps = 14/659 (2%)
Strand=Plus/Plus
Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86
||||||||| | ||| ||| |||| |||||| ||| |||| |||||| ||||||
Sbjct 82661 AAGCTCCTTTAATAAGTTAAGTAGTTTAAGAATGCTGCTTAAAATAAGAGGTATATTTCT 82720
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
|||||||||||||||| || |||||| |||||||| ||||| ||| || |||||| ||
Sbjct 82721 TCTAAAGCTAAATATTAGCTAGAGACTAATAGCGCATAAGTAAAGTAATTAAAAGATAAA 82780
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206
||||||||| |||||| |||||| ||||||| ||||| || |||| ||||||||| ||
Sbjct 82781 AAGCACTTTAAAAAGAGGGTTAAATAGCACGTAAAATTATTAAAAGAGAAGCGCTTATAA 82840
Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT-CGGCCGGTGCACTCTTCTGCGGTCAG 265
| |||||| | | ||| | | | || | | |||| ||||| | || | ||
Sbjct 82841 CTAGACTTACGCCTAGTAAATTACCTAGCTCTTGCGGCTAAGGCACTTTGCT-AGCATAG 82899
Query 266 GCCAGCATCAGCTCGGGCGGTCG-GATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGG 324
|||||||| |||| | || | | | ||| || | || | || ||| || |
Sbjct 82900 GCCAGCATTAGCT-TGCCGTTAGAAACAAAAGCTTTAGAAACATAGCTTTCTTTAGGAAG 82958
Query 325 TGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGAT 384
| |||||||| | | ||| | | || || |||| |||||||| | || ||
Sbjct 82959 TATTATAGCCTGTTGCATAATACCCTTTAGCAGG-CTAAGGTACGCGCTCC-GTAAGAAT 83016
Query 385 GCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTA 444
||| || |||| ||| | || || ||||| ||||| ||| ||||||| |||| | ||
Sbjct 83017 GCTAGCATAATAGTTATTAGTAACCTGTCTTAAAACACAGACTAAGGAGT-TAACCT-TA 83074
Query 445 TGCG--AGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC 502
|| | ||| ||| ||| | |||||| | |||||||| ||||| |||| |||| ||
Sbjct 83075 TGTGTAAGTATTTAGGTATTAAACCCCTACGCGTAATAAAAGTAAACGTAGGTAAGA--G 83132
Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562
| | || || | || || ||||| |||| || ||| ||||| |||||||| |||
Sbjct 83133 CTTTAGCGT--ATTATTAACTAATCCTAATGTTCTCAGATAGATTTAAGTAAGAGTATAT 83190
Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622
| | |||| ||||| ||| |||||||| || |||||||||||||||||||||||||
Sbjct 83191 AGGGTTAGACCTAAAAGAAGGTAAACTATGCATGTATAGGGTGAAGCCAGAGGAAACTCT 83250
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|| ||||| |||| ||||| ||| ||||| || | |||| || | ||| ||||
Sbjct 83251 AGTAAAGGCTTACAGCAGTTCTAACGTATAAATCAATTATTAAATATGCGCATAAGGGC 83309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079983033050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |