Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq222 168 8e-40 seq766 98.7 1e-18 >seq222 Length=6087 Score = 168 bits (186), Expect = 8e-40 Identities = 154/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 2136 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 2077 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | ||| Sbjct 2076 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGGCA 2017 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| ||| ||| || | ||| | || |||| | ||| Sbjct 2016 CACCCAGTGAAGGGCATGCGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 1957 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 1956 GTGAGGCGGACC 1945 >seq766 Length=86199 Score = 98.7 bits (108), Expect = 1e-18 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 7 TAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG 66 ||||||| |||||||||| ||||| |||| |||||||| ||||||||||||| Sbjct 80973 TAGAAACTAACAAAATAGAACTATACGTCTTATTTTATTATTCTATGCTAATGTATTTAA 80914 Query 67 GCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTC 118 | || |||||| | || |||||||||||| | || |||||||||||| ||| Sbjct 80913 GTATAGGCCTGCCTGGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGTTTC 80862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595195439094