Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq222 446 3e-123
seq766 244 2e-62
>seq222
Length=6087
Score = 446 bits (494), Expect = 3e-123
Identities = 286/309 (93%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||||||||||||||
Sbjct 2614 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 2673
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2674 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 2733
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||| ||||||||| |||||| ||||| | || |||||||||
Sbjct 2734 GATGTTCTGGGCCGCACGCGCGTTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 2791
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2792 GAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 2851
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 2852 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 2911
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 2912 CCCTTTGTA 2920
>seq766
Length=86199
Score = 244 bits (270), Expect = 2e-62
Identities = 238/304 (78%), Gaps = 2/304 (1%)
Strand=Plus/Plus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||||||||||| |||||||||| | |||| | | |||| |||||||||||||
Sbjct 81457 AGACCTTAACCTACTAAATAGCCTGTATTACTTTAGTAGTACGCCACCTTCTTAGAGGGA 81516
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
|||| ||| |||| || ||||||| ||| |||||||||||||| || ||||||||| |
Sbjct 81517 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAACAGGTCTGTAATACCCTTAGATAT 81576
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
| | ||| |||||| | |||||| ||| ||| | | ||| | || |||| ||| |||||
Sbjct 81577 TTTAGGCTGCACGCATGTTACACTAACAAAGCTAGCAAGTAC-TC-CCTTAGCCAGAAGG 81634
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| |||||||| ||| | || ||||| |||||| ||||||| || ||
Sbjct 81635 CCTAGGTAATCTTATTAAACTCCGTCATACTAAGGATAAAGCATTATAATTATTACTTTT 81694
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
||| || ||| |||||||||||| || |||||| ||||| |||||||| ||||||||
Sbjct 81695 TAACAAGAAATCCCTAGTAAGCGCAAGTTATCAGCTTGCGTTAATTACGTCTCTGCCCTT 81754
Query 325 TGTA 328
| ||
Sbjct 81755 TATA 81758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947192507648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |