Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq222 446 3e-123 seq766 244 2e-62 >seq222 Length=6087 Score = 446 bits (494), Expect = 3e-123 Identities = 286/309 (93%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | |||||||||||||| Sbjct 2614 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 2673 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2674 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 2733 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||| ||||||||| |||||| ||||| | || ||||||||| Sbjct 2734 GATGTTCTGGGCCGCACGCGCGTTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 2791 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2792 GAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 2851 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 2852 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 2911 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 2912 CCCTTTGTA 2920 >seq766 Length=86199 Score = 244 bits (270), Expect = 2e-62 Identities = 238/304 (78%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| |||||||||| | |||| | | |||| ||||||||||||| Sbjct 81457 AGACCTTAACCTACTAAATAGCCTGTATTACTTTAGTAGTACGCCACCTTCTTAGAGGGA 81516 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||| |||||||||||||| || ||||||||| | Sbjct 81517 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAACAGGTCTGTAATACCCTTAGATAT 81576 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 | | ||| |||||| | |||||| ||| ||| | | ||| | || |||| ||| ||||| Sbjct 81577 TTTAGGCTGCACGCATGTTACACTAACAAAGCTAGCAAGTAC-TC-CCTTAGCCAGAAGG 81634 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| |||||||| ||| | || ||||| |||||| ||||||| || || Sbjct 81635 CCTAGGTAATCTTATTAAACTCCGTCATACTAAGGATAAAGCATTATAATTATTACTTTT 81694 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 ||| || ||| |||||||||||| || |||||| ||||| |||||||| |||||||| Sbjct 81695 TAACAAGAAATCCCTAGTAAGCGCAAGTTATCAGCTTGCGTTAATTACGTCTCTGCCCTT 81754 Query 325 TGTA 328 | || Sbjct 81755 TATA 81758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947192507648