Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq766 619 4e-175 seq222 571 2e-160 seq711 181 3e-43 seq561 91.5 5e-16 >seq766 Length=86199 Score = 619 bits (686), Expect = 4e-175 Identities = 460/536 (86%), Gaps = 5/536 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 85073 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 85014 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 85013 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 84954 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| || || |||| |||||||||||| Sbjct 84953 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 84896 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 84895 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 84839 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| || |||||||| ||||| |||||||||||| Sbjct 84838 TTCTACACCTCCTATGTCTTTTCACAATGTTAAACTAGAGTTAAGCTTAACAGGGTCTTC 84779 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||| ||| |||| || ||||| |||||||| ||| |||||| ||||||||||||||| Sbjct 84778 TTTCCCTGCTAATTCTGCTAAGCCTGTTCCCTTAGCTATGGTTTTGCTAGATAGTAGATA 84719 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 | |||||| ||||||| ||||| ||| || | ||| ||||||||||| | ||| ||| Sbjct 84718 GAGACAGTAGGAATCTTATTAATTTATTTATACACGTTACTAATTAGATAATAAGGTATT 84659 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 | |||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| || Sbjct 84658 TAGCTACCTTAAGAGAGTTATAGTTACTTCTGCCGTTTACCTACGCTTAGTTAAATTACT 84599 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 | ||||||| ||| |||||||| ||||||||| | ||||||| |||| |||||||| Sbjct 84598 TTACTTTGATATTTAGAGCACTAGGCAGAAATTATATTGCGTTAACACCACTTTCT 84543 >seq222 Length=6087 Score = 571 bits (632), Expect = 2e-160 Identities = 352/375 (94%), Gaps = 3/375 (1%) Strand=Plus/Minus Query 169 CCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC 228 |||| |||||||||||| ||||||||||||| ||| | ||||||||||||||| |||| Sbjct 6075 CCAGCCCCGCTTCATTGAATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGC 6016 Query 229 CGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC 288 |||| |||||||| ||||||||||||| | ||| |||||||| ||| ||||||||| Sbjct 6015 CGAA---GCTCCCACCTATTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTC 5959 Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 5958 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGT 5899 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 5898 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTA 5839 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5838 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 5779 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 5778 GCGCTTGGTTGAATTACTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 5719 Query 529 CAACATCACTTTCTG 543 ||||| ||||||||| Sbjct 5718 CAACACCACTTTCTG 5704 >seq711 Length=808606 Score = 181 bits (200), Expect = 3e-43 Identities = 178/228 (78%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATT 248 ||||| |||| ||| | ||| | |||||| | |||||| ||||| || ||| Sbjct 497988 AAGTAGGAAAATAATAGAAGGAGTATTGTTTCACCGGAGCCGAA---GCTCCTACCTATC 498044 Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 |||||| | | | |||| | ||| | ||| ||||||| ||||||||||||||| Sbjct 498045 CTACACATACTGTGACTTTTCGTAGTGTCAAATTAGGGTCAAGCGCAACAGGGTCTTCTT 498104 Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 |||||| |||||| |||||||| || |||||||||||| |||||||| ||||||||||| Sbjct 498105 TCCCCGTTGATTCTGCCAAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGA 498164 Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||| |||||||| |||||||||||| |||||| Sbjct 498165 AGCAGTGGGAATCTCGTTGGTCCATTCAGGCGCGTCACTAA-TAGATG 498211 >seq561 Length=246783 Score = 91.5 bits (100), Expect = 5e-16 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 ||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 202063 TTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTAT 202120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635187065568