Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq766 619 4e-175
seq222 571 2e-160
seq711 181 3e-43
seq561 91.5 5e-16
>seq766
Length=86199
Score = 619 bits (686), Expect = 4e-175
Identities = 460/536 (86%), Gaps = 5/536 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 85073 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 85014
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 85013 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 84954
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| || || |||| ||||||||||||
Sbjct 84953 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 84896
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 84895 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 84839
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| |||||||| || |||||||| ||||| ||||||||||||
Sbjct 84838 TTCTACACCTCCTATGTCTTTTCACAATGTTAAACTAGAGTTAAGCTTAACAGGGTCTTC 84779
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
|||||| ||| |||| || ||||| |||||||| ||| |||||| |||||||||||||||
Sbjct 84778 TTTCCCTGCTAATTCTGCTAAGCCTGTTCCCTTAGCTATGGTTTTGCTAGATAGTAGATA 84719
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
| |||||| ||||||| ||||| ||| || | ||| ||||||||||| | ||| |||
Sbjct 84718 GAGACAGTAGGAATCTTATTAATTTATTTATACACGTTACTAATTAGATAATAAGGTATT 84659
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
| |||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| ||
Sbjct 84658 TAGCTACCTTAAGAGAGTTATAGTTACTTCTGCCGTTTACCTACGCTTAGTTAAATTACT 84599
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
| ||||||| ||| |||||||| ||||||||| | ||||||| |||| ||||||||
Sbjct 84598 TTACTTTGATATTTAGAGCACTAGGCAGAAATTATATTGCGTTAACACCACTTTCT 84543
>seq222
Length=6087
Score = 571 bits (632), Expect = 2e-160
Identities = 352/375 (94%), Gaps = 3/375 (1%)
Strand=Plus/Minus
Query 169 CCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC 228
|||| |||||||||||| ||||||||||||| ||| | ||||||||||||||| ||||
Sbjct 6075 CCAGCCCCGCTTCATTGAATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGC 6016
Query 229 CGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC 288
|||| |||||||| ||||||||||||| | ||| |||||||| ||| |||||||||
Sbjct 6015 CGAA---GCTCCCACCTATTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTC 5959
Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 5958 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGT 5899
Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 5898 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTA 5839
Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5838 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 5779
Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5778 GCGCTTGGTTGAATTACTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 5719
Query 529 CAACATCACTTTCTG 543
||||| |||||||||
Sbjct 5718 CAACACCACTTTCTG 5704
>seq711
Length=808606
Score = 181 bits (200), Expect = 3e-43
Identities = 178/228 (78%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATT 248
||||| |||| ||| | ||| | |||||| | |||||| ||||| || |||
Sbjct 497988 AAGTAGGAAAATAATAGAAGGAGTATTGTTTCACCGGAGCCGAA---GCTCCTACCTATC 498044
Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308
|||||| | | | |||| | ||| | ||| ||||||| |||||||||||||||
Sbjct 498045 CTACACATACTGTGACTTTTCGTAGTGTCAAATTAGGGTCAAGCGCAACAGGGTCTTCTT 498104
Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368
|||||| |||||| |||||||| || |||||||||||| |||||||| |||||||||||
Sbjct 498105 TCCCCGTTGATTCTGCCAAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGA 498164
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 498165 AGCAGTGGGAATCTCGTTGGTCCATTCAGGCGCGTCACTAA-TAGATG 498211
>seq561
Length=246783
Score = 91.5 bits (100), Expect = 5e-16
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65
||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 202063 TTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTAT 202120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635187065568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |