Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq222 762 0.0
seq766 372 9e-101
>seq222
Length=6087
Score = 762 bits (844), Expect = 0.0
Identities = 472/504 (94%), Gaps = 1/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1809 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATCGTCACTACCT 1750
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1749 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 1690
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| ||
Sbjct 1689 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGTAACCATGCTA 1630
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
| ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1629 GAACACTACTCTAGCATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 1570
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||
Sbjct 1569 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGTGAGCCCCGAAGGGCATTGGT 1510
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1509 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 1450
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 1449 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 1390
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1389 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1331
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 1330 AGACAAGCATATGACTACTGGCAG 1307
>seq766
Length=86199
Score = 372 bits (412), Expect = 9e-101
Identities = 385/503 (77%), Gaps = 1/503 (0%)
Strand=Plus/Minus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| |||| ||||| |||||| |||||||| || ||| |||||||||| | ||||||||
Sbjct 80646 TACTTATTCTAATTATAAGACCTAAAAGAGCTCTATATTAGTATTTATTATTACTACCTC 80587
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|| |||| | ||| ||||||||||| |||||||||||| ||| ||| | ||||| ||||
Sbjct 80586 CCTGTGTTAGAATTAGGTAATTTGCGTGCCTGCTGCCTTTCTTAGATATAGTAGCTGTTT 80527
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|| ||||| | |||| || | | || ||| | | |||||| ||| || ||| |||
Sbjct 80526 CTTAGGCTTCTTCTCTAGAGTTAAGCCTTAACCCTCTGTTACCTATTGTAACTATGCTAG 80467
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|||| || || |||||| |||| | |||||||| ||| ||| || || ||
Sbjct 80466 AATACTACTTTAGTATTAAAAGTTAATAGAGAAGAAATTTAAATAAACTATTGCTAGCGT 80407
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
||||| || ||| |||||||||| ||| || | ||| | |||||| || |||
Sbjct 80406 AAGGCTATATAATTTAAGAAGTTATTATAAATTACTAGTAAGCTCTAAAGGGCATTAGTT 80347
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
||| || ||||||||| | | |||| |||| || ||||||| ||||||||||| ||||
Sbjct 80346 TTTAATTTAATAAATATATCTCTTCTAAAGTTAGGATTTTTAGTATGTATTAGCTTTAGA 80287
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||| | |||||| | ||||||||||||||| ||||||| |||||| || |||| ||
Sbjct 80286 ATTACTATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 80227
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| ||| |||||| ||| |||| ||| |||||||||||| ||| || ||||||||||| |
Sbjct 80226 CTATTTACAGTTTTACTATATA-ATTACTTATACTTAGATATGTATAGCTTAATCTTTAA 80168
Query 482 GACAAGCATATGACTACTGGCAG 504
|| ||| |||| |||||| ||||
Sbjct 80167 GATAAGTATATAACTACTAGCAG 80145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510388052736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |