Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq222 762 0.0 seq766 372 9e-101 >seq222 Length=6087 Score = 762 bits (844), Expect = 0.0 Identities = 472/504 (94%), Gaps = 1/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1809 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATCGTCACTACCT 1750 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1749 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 1690 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| || Sbjct 1689 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGTAACCATGCTA 1630 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1629 GAACACTACTCTAGCATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 1570 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| Sbjct 1569 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGTGAGCCCCGAAGGGCATTGGT 1510 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1509 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 1450 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 1449 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 1390 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1389 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1331 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 1330 AGACAAGCATATGACTACTGGCAG 1307 >seq766 Length=86199 Score = 372 bits (412), Expect = 9e-101 Identities = 385/503 (77%), Gaps = 1/503 (0%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| ||||| |||||| |||||||| || ||| |||||||||| | |||||||| Sbjct 80646 TACTTATTCTAATTATAAGACCTAAAAGAGCTCTATATTAGTATTTATTATTACTACCTC 80587 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || |||| | ||| ||||||||||| |||||||||||| ||| ||| | ||||| |||| Sbjct 80586 CCTGTGTTAGAATTAGGTAATTTGCGTGCCTGCTGCCTTTCTTAGATATAGTAGCTGTTT 80527 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || ||||| | |||| || | | || ||| | | |||||| ||| || ||| ||| Sbjct 80526 CTTAGGCTTCTTCTCTAGAGTTAAGCCTTAACCCTCTGTTACCTATTGTAACTATGCTAG 80467 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 |||| || || |||||| |||| | |||||||| ||| ||| || || || Sbjct 80466 AATACTACTTTAGTATTAAAAGTTAATAGAGAAGAAATTTAAATAAACTATTGCTAGCGT 80407 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| || ||| |||||||||| ||| || | ||| | |||||| || ||| Sbjct 80406 AAGGCTATATAATTTAAGAAGTTATTATAAATTACTAGTAAGCTCTAAAGGGCATTAGTT 80347 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| || ||||||||| | | |||| |||| || ||||||| ||||||||||| |||| Sbjct 80346 TTTAATTTAATAAATATATCTCTTCTAAAGTTAGGATTTTTAGTATGTATTAGCTTTAGA 80287 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | |||||| | ||||||||||||||| ||||||| |||||| || |||| || Sbjct 80286 ATTACTATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 80227 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| |||||| ||| |||| ||| |||||||||||| ||| || ||||||||||| | Sbjct 80226 CTATTTACAGTTTTACTATATA-ATTACTTATACTTAGATATGTATAGCTTAATCTTTAA 80168 Query 482 GACAAGCATATGACTACTGGCAG 504 || ||| |||| |||||| |||| Sbjct 80167 GATAAGTATATAACTACTAGCAG 80145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510388052736