Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1639 713 0.0 >seq1639 Length=5844 Score = 713 bits (790), Expect = 0.0 Identities = 561/664 (84%), Gaps = 12/664 (2%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||| || Sbjct 2026 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATAT 1967 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1966 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 1907 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||| Sbjct 1906 TGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTT 1847 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCGG 261 | ||||||||||| | | || ||| || || | | |||| || ||||| | | | | Sbjct 1846 GTGACCAGACTTGCGCCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTTGCCG-GC 1788 Query 262 TCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319 |||||||||||||||| | | ||| ||| ||| || | |||| || || | ||||| Sbjct 1787 ACAGGCCAGCATCAGCTTGCCGTCGG--GGACAAAAGCTTCAGGAACGTAGCTCTCTTCG 1730 Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379 ||| ||||||||||| | | ||| | || | || ||||||| |||||||| || Sbjct 1729 GGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGC-GGGCTGAGGTACGCGCTCC-GCA 1672 Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||||||||||||||||||| | |||| ||||||||| |||||||||||||||||| | | Sbjct 1671 AGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACC 1612 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 | | ||||||||||||||||| |||||| | ||||||||||||||||||| ||||| || Sbjct 1611 TTATGTGCGAGTGTTTGGGTGTTAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA 1552 Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559 | || ||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1551 ----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 1496 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 || | | |||||||||||| |||||||||||| || |||||||||||||||||||||| Sbjct 1495 TATAGGGTTGGACCCGAAAGAAGGTGAACTATGCGTGTATAGGGTGAAGCCAGAGGAAAC 1436 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||||||||||||||||||||||||| ||||||||||||||||||||| || | || ||| Sbjct 1435 TCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGCGCATGGGG 1376 Query 680 GCGA 683 |||| Sbjct 1375 GCGA 1372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079964671850