Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1073 693 0.0 seq1639 246 1e-62 seq322 181 3e-43 seq73 87.8 6e-15 >seq1073 Length=767 Score = 693 bits (768), Expect = 0.0 Identities = 441/477 (92%), Gaps = 5/477 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 472 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 413 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 412 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 353 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| || || |||| |||||||||||| Sbjct 352 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 295 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 294 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 238 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 237 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 178 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 118 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 117 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 58 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 1 >seq1639 Length=5844 Score = 246 bits (272), Expect = 1e-62 Identities = 139/141 (99%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 60 Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 TTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 120 Query 523 TTGCGTCAACATCACTTTCTG 543 ||||||||||| ||||||||| Sbjct 121 TTGCGTCAACACCACTTTCTG 141 >seq322 Length=221078 Score = 181 bits (200), Expect = 3e-43 Identities = 178/228 (78%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATT 248 ||||| |||| ||| | ||| | |||||| | |||||| ||||| || ||| Sbjct 191953 AAGTAGGAAAATAATAGAAGGAGTATTGTTTCACCGGAGCCGAA---GCTCCTACCTATC 192009 Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 |||||| | | | |||| | ||| | ||| ||||||| ||||||||||||||| Sbjct 192010 CTACACATACTGTGACTTTTCGTAGTGTCAAATTAGGGTCAAGCGCAACAGGGTCTTCTT 192069 Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 |||||| |||||| |||||||| || |||||||||||| |||||||| ||||||||||| Sbjct 192070 TCCCCGTTGATTCTGCCAAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGA 192129 Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||| |||||||| |||||||||||| |||||| Sbjct 192130 AGCAGTGGGAATCTCGTTGGTCCATTCAGGCGCGTCACTAA-TAGATG 192176 >seq73 Length=69786 Score = 87.8 bits (96), Expect = 6e-15 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 ||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 52941 TTTTGTTCTACTGGAGATTTCTGTTCTCCGTGAGCCCCCCTTAGGACACCTGCGTTAT 52884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635173068256