Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq273 356 2e-93 seq1177 134 1e-26 >seq273 Length=152475 Score = 356 bits (394), Expect = 2e-93 Identities = 1143/1745 (66%), Gaps = 60/1745 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || | | |||||| |||| || | || ||||||||||| ||| Sbjct 73131 TCGACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 73072 Query 65138 TTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCT 65195 || ||||| ||| ||| | ||||||||| | || | || |||| | |||| | Sbjct 73071 TTCAGGCCGAGCTT-CCAGCCGGCGAAATGCAT-GCTGGTTATCTTGCCCATGGTCGGGT 73014 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || || || | |||||| ||| |||||| | |||||| || ||||||| Sbjct 73013 CCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCA 72954 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | | | | ||| ||| |||||||| || |||||||||||| | | | |||||| Sbjct 72953 TCTGCACAACAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAGG-GCCTTGACCTCA 72895 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 | ||||| | |||| ||||| ||||| ||||| ||||| || ||| Sbjct 72894 GTAGGAATGTTGGGGATGTTCTGGATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 72835 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTT----GAACCAAGTGACGATTGATGAC 65430 | || ||||||| ||||| |||| |||| | || ||||| | |||| || Sbjct 72834 GCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAAGGG----TTGACAAC 72779 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||||| || | || |||||||| ||||||||||| ||| ||| |||||| | Sbjct 72778 CTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCA 72719 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| | || || | || ||||| |||||||| ||||| | | || Sbjct 72718 CTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGA 72659 Query 65551 GTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGT 65608 ||| || | |||| | | ||| | | ||| | ||||||| ||| | || | Sbjct 72658 GTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAGAGATCCG- 72600 Query 65609 TTATCG-TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 | | | ||||| | ||||| || | || ||| | || | | || || Sbjct 72599 --AGGGCTTGACATTC------CACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGA 72548 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG-ACAGC--TGGTCTCGAG 65724 ||| | | | | ||| |||||||||||||| || || || | |||| ||| Sbjct 72547 ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATGGT---GAG 72491 Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCATCGCTCT 65783 || || || ||||||||||| || | || || || || || ||||| || Sbjct 72490 GGCAGCGTGGTAGATGGTCTCGAAGAT-CTTCTTGTTGAGGTCGCGAGCCTCGGGAGACT 72432 Query 65784 CGTACGGCATACCCAT---CAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 || | ||||||| | ||||| | | || || ||||| || || || | ||||| Sbjct 72431 CGAAGGGCATACGGAGAGCCAGGA---AGGCATCAGCAAGACCCTGGACACCGAGACCGA 72375 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 |||| || || |||| ||| | ||||| | |||||||||| |||| |||| Sbjct 72374 TGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGA 72315 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCA 65959 | || | |||| ||||| || || || || ||| | || | ||| || Sbjct 72314 TGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTG-GAAGTCG 72256 Query 65960 AAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCG 66019 | ||| || || | || ||||| |||| ||||| || || || Sbjct 72255 TA--------GAC--TCCCTCGTTGTAGTCA--ACAAAGGTGGGCAGGGCGAGCGAGGCC 72208 Query 66020 AGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTA 66079 |||||||||||||| | ||| ||||| ||| ||||||| ||| || ||||| || || Sbjct 72207 AGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTG 72148 Query 66080 CTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTAC 66139 || ||| || ||||| | |||| || || |||||||| ||| ||||||||||| Sbjct 72147 GAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAG 72088 Query 66140 ATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGT 66199 | |||| | || | || ||||| |||| ||| | |||||| | ||| || | Sbjct 72087 AGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGA 72028 Query 66200 GCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAA 66258 ||||||| || | | | |||| || | | ||||| | ||||| | | || || Sbjct 72027 GCCTTCATGGT-CTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAA 71969 Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318 || || | |||| ||| | || || | || || ||||| || | ||| || Sbjct 71968 CTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTC 71909 Query 66319 ACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378 |||| || || || | ||| || || || || |||||||||||| ||| || || Sbjct 71908 CCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTC 71849 Query 66379 GCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438 || || || |||||| ||||||| || |||||||| || | ||| || |||| || Sbjct 71848 ACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATC 71789 Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 ||| ||||| || || ||||| |||||||| | || || ||| |||||| ||||| Sbjct 71788 GGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGGTC 71729 Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558 |||||||||||| |||||||||||||| | ||| || |||| ||||| || | || Sbjct 71728 GACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTACC 71669 Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACC 66618 || |||||| | || || || || || || ||| || || |||||||| || Sbjct 71668 GTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATGCC 71609 Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTGTCCGGAATATGCCGTCAATG 66676 ||||||| |||| ||||| || ||| || | |||| | || || ||||| Sbjct 71608 ACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTC--ATAGATACCCTCAATA 71551 Query 66677 GAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCC 66736 ||||| |||| ||| | |||| |||| || || |||| | || || |||| Sbjct 71550 GAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCGGCG 71491 Query 66737 GAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCG 66796 |||||| ||||| | ||||| || ||| | | || ||||| ||||| || ||| Sbjct 71490 TTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGTTTCG 71431 Query 66797 ATGAC 66801 ||||| Sbjct 71430 ATGAC 71426 >seq1177 Length=83355 Score = 134 bits (148), Expect = 1e-26 Identities = 289/425 (68%), Gaps = 9/425 (2%) Strand=Plus/Minus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || |||||| | || ||||| || | || ||| | ||||| ||| | ||||| ||||| Sbjct 26828 GTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGT 26769 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 ||||||||||||||||||||| ||| ||| |||| || || || ||||| | || Sbjct 26768 CTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCACACC 26709 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCT-ATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 || || || | || | || || | || ||| || || || || | Sbjct 26708 GACTTCGCCTGCCTCCTCT----ACTCTCACCTCAAGAACCGCCCCAGCAAGCAGGTCAT 26653 Query 61689 GGGTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 | || || | ||| || || || | || || ||||| || ||||| || ||| ||| Sbjct 26652 TGAGGACATCAT-CGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGC 26594 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 | | | || |||||||||| | || ||| |||||| ||||| |||||||||| Sbjct 26593 CTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCG 26534 Query 61808 ACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 |||| || ||||| | | | || |||| || |||| || | ||||| ||||| Sbjct 26533 ACCGCCTCTTGGTTGCTCTCGGCAATGACAAGG-TCTACAAGTCTTCCAACCCCTTTGAC 26475 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 |||||||| | || || |||| |||||||| || || || ||||| ||||| | |||| Sbjct 26474 TTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGAC 26415 Query 61927 TATCA 61931 || || Sbjct 26414 TACCA 26410 Score = 132 bits (146), Expect = 4e-26 Identities = 210/297 (71%), Gaps = 7/297 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||| | |||||| | ||| || Sbjct 27314 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 27255 Query 61147 TCCAAAGACATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | | | | |||| | ||| | | ||||| Sbjct 27254 TCCAAGGATCTCCACGACTGGAACAATAAGATCAACGAG-GATGAGAAGTACTTCATCTC 27196 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | | || ||||| |||||||| ||||| || ||||||||||| || | || || Sbjct 27195 GCACATCCTCGCCTTCTTCGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGTCGAGCG 27136 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| ||| ||||| || || | ||||| ||||| ||||| |||||||| || | Sbjct 27135 CTTCAGCG-GCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATGA 27077 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||||||| ||||||| |||| ||| | |||||||| || ||||||| ||||| Sbjct 27076 TGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATCGACACCTACATCAAGGAGC 27020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560019692080