Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq347 269 4e-70 seq3 125 1e-26 >seq347 Length=5318 Score = 269 bits (298), Expect = 4e-70 Identities = 200/229 (87%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 878 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 821 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 820 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 761 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||||| || |||| || | | |||||||| |||||||||| Sbjct 760 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAACGCGCGTGCG 703 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 654 >seq3 Length=27607 Score = 125 bits (138), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||| ||||| | ||| | |||| || ||| |||||||||||| ||| || Sbjct 7187 TACAAAGGGCAGAAACGTAATTAACACAAGCTA-ATAACTTGCGCTTACTAGGGATT-CC 7244 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 | || |||| ||| |||| |||| |||||||| | | | | ||| | ||||||| Sbjct 7245 TTATTAAAGAGCAATAATTACAATACTCTATCCCTAGTATAACAGAGTTTAACAAGATTA 7304 Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 || | ||| |||| ||| | || ||| || | || ||| || | |||||| | Sbjct 7305 CCTAGGCCTTCCGGCTAAG---AGAGTACTTACTGGCTTTATTAGTATAACACGCGTGTG 7361 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 ||| |||| ||||||||| || |||||||||||||| ||| ||||||| Sbjct 7362 GCCTAGAATATCTAAGGGTATTACAGACCTGTTATTACCTTAAACTTC 7409 Score = 93.3 bits (102), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||||||||||||| | |||| ||| | || ||| |||||||||| | |||| Sbjct 15169 TACAAAGGGCAGGGACGTAATTAACGTAAGC-TAATAACTTATGCTTACTAGGGA-TTCC 15226 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 | || || | || |||| ||| | |||| | | || || ||| | ||||||| Sbjct 15227 TTATTAAAAAGTAATAATTATAATACTTTATCTTTAGTATAATAAAGTTTAATAAGATTA 15286 Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 || | ||| | || || || || ||| | | || ||| || ||||||| | Sbjct 15287 CCTAGGCCTTTTAGCTAA---GAGAGTACTTACTAGCTTTATTAGTATAACGCGCGTACA 15343 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 ||| |||| |||||| ||||| |||||||| ||||| ||| ||||||| Sbjct 15344 GCCTAGAATATCTAAAGGCATTACAGACCTATTATTACCTTAAACTTC 15391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751996532340