Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq347 269 4e-70
seq3 125 1e-26
>seq347
Length=5318
Score = 269 bits (298), Expect = 4e-70
Identities = 200/229 (87%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 878 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 821
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 820 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 761
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| ||| ||||||||| || |||| || | | |||||||| ||||||||||
Sbjct 760 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAACGCGCGTGCG 703
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 654
>seq3
Length=27607
Score = 125 bits (138), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 7/228 (3%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||||||| ||||| | ||| | |||| || ||| |||||||||||| ||| ||
Sbjct 7187 TACAAAGGGCAGAAACGTAATTAACACAAGCTA-ATAACTTGCGCTTACTAGGGATT-CC 7244
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120
| || |||| ||| |||| |||| |||||||| | | | | ||| | |||||||
Sbjct 7245 TTATTAAAGAGCAATAATTACAATACTCTATCCCTAGTATAACAGAGTTTAACAAGATTA 7304
Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|| | ||| |||| ||| | || ||| || | || ||| || | |||||| |
Sbjct 7305 CCTAGGCCTTCCGGCTAAG---AGAGTACTTACTGGCTTTATTAGTATAACACGCGTGTG 7361
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227
||| |||| ||||||||| || |||||||||||||| ||| |||||||
Sbjct 7362 GCCTAGAATATCTAAGGGTATTACAGACCTGTTATTACCTTAAACTTC 7409
Score = 93.3 bits (102), Expect = 6e-17
Identities = 161/228 (71%), Gaps = 7/228 (3%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
||||||||||||||||||| | |||| ||| | || ||| |||||||||| | ||||
Sbjct 15169 TACAAAGGGCAGGGACGTAATTAACGTAAGC-TAATAACTTATGCTTACTAGGGA-TTCC 15226
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120
| || || | || |||| ||| | |||| | | || || ||| | |||||||
Sbjct 15227 TTATTAAAAAGTAATAATTATAATACTTTATCTTTAGTATAATAAAGTTTAATAAGATTA 15286
Query 121 CCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|| | ||| | || || || || ||| | | || ||| || ||||||| |
Sbjct 15287 CCTAGGCCTTTTAGCTAA---GAGAGTACTTACTAGCTTTATTAGTATAACGCGCGTACA 15343
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227
||| |||| |||||| ||||| |||||||| ||||| ||| |||||||
Sbjct 15344 GCCTAGAATATCTAAAGGCATTACAGACCTATTATTACCTTAAACTTC 15391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751996532340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |