Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq347 172 3e-41 seq3 80.6 1e-13 >seq347 Length=5318 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 352 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 294 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 293 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 237 >seq3 Length=27607 Score = 80.6 bits (88), Expect = 1e-13 Identities = 81/104 (78%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70 |||||||||||| |||| ||| | | |||||||| ||||||| || |||| |||| Sbjct 7722 ACTTTGATTTCTTATAAGATGCTAAACAAGTCAAAAA-ATAACATTATCCAATCCTTAGT 7780 Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114 | |||||||||| ||||||||||| || |||| | || |||| Sbjct 7781 CAGCATAGTTTATAGTTAAGACTACAACAGTATTTAATTATCTT 7824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278398757640