Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq347 363 3e-98
seq3 309 6e-82
seq173 242 7e-62
seq92 181 2e-43
>seq347
Length=5318
Score = 363 bits (402), Expect = 3e-98
Identities = 223/236 (94%), Gaps = 1/236 (0%)
Strand=Plus/Plus
Query 83 AAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAA 142
|||||||||||||| || | |||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGAA 60
Query 143 TAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAG 202
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACAG 120
Query 203 TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACT 262
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACT 180
Query 263 ACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 181 ACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GAACGAAAGTTAGGGG 235
>seq3
Length=27607
Score = 309 bits (342), Expect = 6e-82
Identities = 251/303 (83%), Gaps = 1/303 (0%)
Strand=Plus/Minus
Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75
||||||||| |||| || | | |||||||| ||| ||||||| ||| |||||||||
Sbjct 8130 GGCCTTTCCCTCTGTAGAACTGTATGCCCTTTACTAGGTGTGCTAAGGAAACAGGACTTT 8071
Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135
|||||| |||||||||||||| | | |||||||| |||| |||||||||| || |||
Sbjct 8070 TACTTTAAAAAAATTAGAGTGCTTTAGGCAGGCCTATGCTTAAATACATTAGTATAAAAT 8011
Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195
||||||||||||||| |||| |||||| || ||||||||||| |||||||| |||||||
Sbjct 8010 AATAGAATAGGACGTATGGTTTTATTTTATTAGTTTCTAGGACTGCCGTAATAATTAATA 7951
Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255
|||||||| |||| | |||||| |||| | |||||| |||||||| |||||||| |||
Sbjct 7950 GGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTCTTAGATTTATTAAAG 7891
Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315
||||||||||| ||||| || | ||||||||||| ||| || || |||||||||||||
Sbjct 7890 ACTAACTACTGTAAAAGCATTTGCTAAGGATGTTTTTATTTATTAG-GAACGAAAGTTAG 7832
Query 316 GGG 318
|||
Sbjct 7831 GGG 7829
Score = 284 bits (314), Expect = 2e-74
Identities = 251/312 (80%), Gaps = 1/312 (0%)
Strand=Plus/Minus
Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66
||| ||| ||||||| | |||| || | ||||||| || ||| ||| ||| | ||
Sbjct 16121 GTCTGGCTAGGCCTTTTCCTCTGTAGAACTGCATGCCTTTTACTAGGTATGCTAGAGAAA 16062
Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126
||||||||||||||| || ||||||||||| || | |||||||| |||| |||| ||||
Sbjct 16061 CAGGACTTTTACTTTAAATAAATTAGAGTGCTCTAGGCAGGCCTATGCTTAAATATATTA 16002
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186
|||| ||||||||||||| |||||| ||| |||||| || ||||||||||| || ||||
Sbjct 16001 GCATAGAATAATAGAATAAGACGTGTAGTTTTATTTTATTAGTTTCTAGGACTGCTGTAA 15942
Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246
| ||||||||||||||| | || | |||||| |||| | | |||| |||||||| |||
Sbjct 15941 TAATTAATAGGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTCTTAGAT 15882
Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306
||||| |||||||||||||| ||||| || || ||| ||||||| ||| || || ||||
Sbjct 15881 TTATTAAAGACTAACTACTGTAAAAGCATTTACTAAGAATGTTTTTATTTATTAG-GAAC 15823
Query 307 GAAAGTTAGGGG 318
|||||||||||
Sbjct 15822 AAAAGTTAGGGG 15811
Score = 251 bits (278), Expect = 1e-64
Identities = 243/311 (78%), Gaps = 1/311 (0%)
Strand=Plus/Minus
Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66
||| ||| |||||||| ||| || | |||||||| ||| ||| | | ||||
Sbjct 24103 GTCTGGCTAGGCCTTTCTCTCTATAGAACTATATGCCCTTTACTAGGTATACTAGGGAAA 24044
Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126
||| ||||||||||| |||||||||||||| | | |||||||| | || |||||||||
Sbjct 24043 CAGAACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGCAGGCCTATACTTAAATACATTA 23984
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186
| || ||||||| |||| ||||| ||||||||||||| ||||||||||| | ||||
Sbjct 23983 GTATAAAATAATAAAATAAGACGTATAGTTCTATTTTGTTAGTTTCTAGGACTACTGTAA 23924
Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246
| ||||||||||||||| | || | |||||| |||| | | |||| |||||||| |||
Sbjct 23923 TAATTAATAGGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTCTTAGAT 23864
Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306
||||| ||||||||||||| ||||| || || ||||||||||| ||| || | ||||
Sbjct 23863 TTATTAAAGACTAACTACTATAAAAGCATTTACTAAGGATGTTTTTATTTATTA-AGAAC 23805
Query 307 GAAAGTTAGGG 317
||||||||||
Sbjct 23804 AAAAGTTAGGG 23794
Score = 197 bits (218), Expect = 3e-48
Identities = 138/157 (88%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66
||| ||| ||||||||| | || ||| |||||||||||| ||| ||||||| ||||
Sbjct 157 GTCTGGCTAGGCCTTTCCCTTTGTGGAACCGCATGCCCTTTACTAGGTGTGCTAGGGAAA 98
Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126
||||||||||||||| |||||||||||||| || | |||||||| |||||||||||||||
Sbjct 97 CAGGACTTTTACTTTAAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTA 38
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT 163
||||||||||||||||||||||||| |||||||||||
Sbjct 37 GCATGGAATAATAGAATAGGACGTGTGGTTCTATTTT 1
>seq173
Length=2808
Score = 242 bits (268), Expect = 7e-62
Identities = 149/159 (94%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 159 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGA 100
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 99 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 40
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT 163
||||||||||||||||||||||||||| |||||||||||
Sbjct 39 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTT 1
>seq92
Length=26029
Score = 181 bits (200), Expect = 2e-43
Identities = 190/247 (77%), Gaps = 2/247 (1%)
Strand=Plus/Minus
Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG 127
|||||||||||||| ||||||||| |||| | ||| |||||| |||| |||| |||||
Sbjct 9457 AGGACTTTTACTTT-AAAAAATTAAAGTGCTTTAAGTAGGCCTATGCTTAAATATATTAG 9399
Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187
|| ||||||| ||||| | | ||| |||||| || ||||||| ||| | ||||
Sbjct 9398 TATAAAATAATAAAATAGAATATATAGTTTTATTTTATTAGTTTCTAAGACTACTATAAT 9339
Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247
||||||| ||||||| | || | |||||| |||| | | |||| |||||||| ||||
Sbjct 9338 AATTAATAAGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTCTTAGATT 9279
Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307
|||| ||||||||||||| |||| || || ||| ||||||| ||| || | ||||
Sbjct 9278 TATTAAAGACTAACTACTATAAAAGTATTTACTAAGAATGTTTTTATTTATTA-AGAACA 9220
Query 308 AAAGTTA 314
|||||||
Sbjct 9219 AAAGTTA 9213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915195643648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |