Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq347 363 3e-98 seq3 309 6e-82 seq173 242 7e-62 seq92 181 2e-43 >seq347 Length=5318 Score = 363 bits (402), Expect = 3e-98 Identities = 223/236 (94%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 83 AAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAA 142 |||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||| Sbjct 1 AAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGAA 60 Query 143 TAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAG 202 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 TAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACAG 120 Query 203 TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACT 262 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACT 180 Query 263 ACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||| || ||||||||||||||||| ||||| |||||||||||||||| Sbjct 181 ACTGCGAAAGCATTTGCCAAGGATGTTTTCATTTATCAG-GAACGAAAGTTAGGGG 235 >seq3 Length=27607 Score = 309 bits (342), Expect = 6e-82 Identities = 251/303 (83%), Gaps = 1/303 (0%) Strand=Plus/Minus Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75 ||||||||| |||| || | | |||||||| ||| ||||||| ||| ||||||||| Sbjct 8130 GGCCTTTCCCTCTGTAGAACTGTATGCCCTTTACTAGGTGTGCTAAGGAAACAGGACTTT 8071 Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 |||||| |||||||||||||| | | |||||||| |||| |||||||||| || ||| Sbjct 8070 TACTTTAAAAAAATTAGAGTGCTTTAGGCAGGCCTATGCTTAAATACATTAGTATAAAAT 8011 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 ||||||||||||||| |||| |||||| || ||||||||||| |||||||| ||||||| Sbjct 8010 AATAGAATAGGACGTATGGTTTTATTTTATTAGTTTCTAGGACTGCCGTAATAATTAATA 7951 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 |||||||| |||| | |||||| |||| | |||||| |||||||| |||||||| ||| Sbjct 7950 GGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTCTTAGATTTATTAAAG 7891 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 ||||||||||| ||||| || | ||||||||||| ||| || || ||||||||||||| Sbjct 7890 ACTAACTACTGTAAAAGCATTTGCTAAGGATGTTTTTATTTATTAG-GAACGAAAGTTAG 7832 Query 316 GGG 318 ||| Sbjct 7831 GGG 7829 Score = 284 bits (314), Expect = 2e-74 Identities = 251/312 (80%), Gaps = 1/312 (0%) Strand=Plus/Minus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66 ||| ||| ||||||| | |||| || | ||||||| || ||| ||| ||| | || Sbjct 16121 GTCTGGCTAGGCCTTTTCCTCTGTAGAACTGCATGCCTTTTACTAGGTATGCTAGAGAAA 16062 Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126 ||||||||||||||| || ||||||||||| || | |||||||| |||| |||| |||| Sbjct 16061 CAGGACTTTTACTTTAAATAAATTAGAGTGCTCTAGGCAGGCCTATGCTTAAATATATTA 16002 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 |||| ||||||||||||| |||||| ||| |||||| || ||||||||||| || |||| Sbjct 16001 GCATAGAATAATAGAATAAGACGTGTAGTTTTATTTTATTAGTTTCTAGGACTGCTGTAA 15942 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 | ||||||||||||||| | || | |||||| |||| | | |||| |||||||| ||| Sbjct 15941 TAATTAATAGGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTCTTAGAT 15882 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 ||||| |||||||||||||| ||||| || || ||| ||||||| ||| || || |||| Sbjct 15881 TTATTAAAGACTAACTACTGTAAAAGCATTTACTAAGAATGTTTTTATTTATTAG-GAAC 15823 Query 307 GAAAGTTAGGGG 318 ||||||||||| Sbjct 15822 AAAAGTTAGGGG 15811 Score = 251 bits (278), Expect = 1e-64 Identities = 243/311 (78%), Gaps = 1/311 (0%) Strand=Plus/Minus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66 ||| ||| |||||||| ||| || | |||||||| ||| ||| | | |||| Sbjct 24103 GTCTGGCTAGGCCTTTCTCTCTATAGAACTATATGCCCTTTACTAGGTATACTAGGGAAA 24044 Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126 ||| ||||||||||| |||||||||||||| | | |||||||| | || ||||||||| Sbjct 24043 CAGAACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGCAGGCCTATACTTAAATACATTA 23984 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 | || ||||||| |||| ||||| ||||||||||||| ||||||||||| | |||| Sbjct 23983 GTATAAAATAATAAAATAAGACGTATAGTTCTATTTTGTTAGTTTCTAGGACTACTGTAA 23924 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 | ||||||||||||||| | || | |||||| |||| | | |||| |||||||| ||| Sbjct 23923 TAATTAATAGGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTCTTAGAT 23864 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 ||||| ||||||||||||| ||||| || || ||||||||||| ||| || | |||| Sbjct 23863 TTATTAAAGACTAACTACTATAAAAGCATTTACTAAGGATGTTTTTATTTATTA-AGAAC 23805 Query 307 GAAAGTTAGGG 317 |||||||||| Sbjct 23804 AAAAGTTAGGG 23794 Score = 197 bits (218), Expect = 3e-48 Identities = 138/157 (88%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGC 66 ||| ||| ||||||||| | || ||| |||||||||||| ||| ||||||| |||| Sbjct 157 GTCTGGCTAGGCCTTTCCCTTTGTGGAACCGCATGCCCTTTACTAGGTGTGCTAGGGAAA 98 Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126 ||||||||||||||| |||||||||||||| || | |||||||| ||||||||||||||| Sbjct 97 CAGGACTTTTACTTTAAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTA 38 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT 163 ||||||||||||||||||||||||| ||||||||||| Sbjct 37 GCATGGAATAATAGAATAGGACGTGTGGTTCTATTTT 1 >seq173 Length=2808 Score = 242 bits (268), Expect = 7e-62 Identities = 149/159 (94%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| Sbjct 159 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCGCATGCCCTTCACTGGGTGTGCCGGGGA 100 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 99 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 40 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT 163 ||||||||||||||||||||||||||| ||||||||||| Sbjct 39 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTT 1 >seq92 Length=26029 Score = 181 bits (200), Expect = 2e-43 Identities = 190/247 (77%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG 127 |||||||||||||| ||||||||| |||| | ||| |||||| |||| |||| ||||| Sbjct 9457 AGGACTTTTACTTT-AAAAAATTAAAGTGCTTTAAGTAGGCCTATGCTTAAATATATTAG 9399 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 || ||||||| ||||| | | ||| |||||| || ||||||| ||| | |||| Sbjct 9398 TATAAAATAATAAAATAGAATATATAGTTTTATTTTATTAGTTTCTAAGACTACTATAAT 9339 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||||||| ||||||| | || | |||||| |||| | | |||| |||||||| |||| Sbjct 9338 AATTAATAAGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTCTTAGATT 9279 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||| ||||||||||||| |||| || || ||| ||||||| ||| || | |||| Sbjct 9278 TATTAAAGACTAACTACTATAAAAGTATTTACTAAGAATGTTTTTATTTATTA-AGAACA 9220 Query 308 AAAGTTA 314 ||||||| Sbjct 9219 AAAGTTA 9213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915195643648