Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq347 713 0.0 seq3 361 2e-97 seq151 176 2e-41 seq92 114 5e-23 >seq347 Length=5318 Score = 713 bits (790), Expect = 0.0 Identities = 561/664 (84%), Gaps = 12/664 (2%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||| || Sbjct 1776 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATAT 1835 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1836 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 1895 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||| Sbjct 1896 TGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTT 1955 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCGG 261 | ||||||||||| | | || ||| || || | | |||| || ||||| | | | | Sbjct 1956 GTGACCAGACTTGCGCCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTTGCCG-GC 2014 Query 262 TCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319 |||||||||||||||| | | ||| ||| ||| || | |||| || || | ||||| Sbjct 2015 ACAGGCCAGCATCAGCTTGCCGTCGG--GGACAAAAGCTTCAGGAACGTAGCTCTCTTCG 2072 Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379 ||| ||||||||||| | | ||| | || | || ||||||| |||||||| || Sbjct 2073 GGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGC-GGGCTGAGGTACGCGCTCC-GCA 2130 Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||||||||||||||||||| | |||| ||||||||| |||||||||||||||||| | | Sbjct 2131 AGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACC 2190 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 | | ||||||||||||||||| |||||| | ||||||||||||||||||| ||||| || Sbjct 2191 TTATGTGCGAGTGTTTGGGTGTTAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA 2250 Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559 | || ||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2251 ----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 2306 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 || | | |||||||||||| |||||||||||| || |||||||||||||||||||||| Sbjct 2307 TATAGGGTTGGACCCGAAAGAAGGTGAACTATGCGTGTATAGGGTGAAGCCAGAGGAAAC 2366 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||||||||||||||||||||||||| ||||||||||||||||||||| || | || ||| Sbjct 2367 TCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGCGCATGGGG 2426 Query 680 GCGA 683 |||| Sbjct 2427 GCGA 2430 >seq3 Length=27607 Score = 361 bits (400), Expect = 2e-97 Identities = 486/663 (73%), Gaps = 14/663 (2%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||| || | ||| ||| |||||||||||| ||| |||| ||||||| || Sbjct 6288 TGTAAAGCTCTTTTAATAAGTTAAGTAGTTTGGGAATGCTGCTTAAAATAGGAGGTATAT 6229 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 |||||||||||||||||||| || |||||| |||||||| ||||||||| || ||||| Sbjct 6228 TTCTTCTAAAGCTAAATATTAGCTAGAGACTAATAGCGCATAAGTAGAGTAATTAAAAGA 6169 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 | ||||||||||| |||||| |||||| || | || |||||||| |||||||||||||| Sbjct 6168 TAAAAAGCACTTTAAAAAGAGGGTTAAATAGTATGTAAAATTGTTAAAAGGGAAGCGCTT 6109 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT-CGGCCGGTGCACTCTTCTGCGG 261 | |||||||||| | | || | | | || | | ||| | ||||| | ||| | Sbjct 6108 GTAACCAGACTTACGCCTGGTGAATTACCTAGCTCTTGTGGCTAGGGCACTTTGCTG-GC 6050 Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCG-GATAAAGGCCCCGGGAATGTGGCCCCCTTCGG 320 |||||||||| |||| | || | | || ||| || |||| || || | ||| | Sbjct 6049 ATAGGCCAGCATTAGCT-TGCCGTTAGAGACAAAAGCTTTAGGAACGTAGCTCTCTTTAG 5991 Query 321 GGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTA 380 || ||||||||||| | | ||| | | | || || |||| | ||||| | | Sbjct 5990 GGAGTGTTATAGCCTGTTGCATAATACCCTTTGGCAGG-CTAAGGTATGTGCTCC-GTAA 5933 Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||||||||||||||| | || | || ||||| ||||| ||| ||||||| |||| Sbjct 5932 GGATGCTGGCGTAATGGTTATTAGTGACCTGTCTTAAAACACAGACTAAGGAGT-TAACC 5874 Query 441 TCTATGCG--AGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 | |||| | ||||||| ||||| ||||| | ||||||| ||||| |||| ||||| | Sbjct 5873 T-TATGTGTAAGTGTTTAGGTGTTAAACCTCTATGCGTAATAAAAGTAAACGCAGGTGAG 5815 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 | | | | || || || || ||||| |||| | ||| ||||| |||||||| Sbjct 5814 A--GCTTTA--GTACATTATTAACTAATCCTAATGTTCTTAGATAGATTTAAGTAAGAGT 5759 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||| | | |||| ||||| ||| ||||||| | ||| |||||||| |||||||| Sbjct 5758 ATATAGGGTTAGACCTAAAAGAAGGTAAACTATGTGTATATAAGGTGAAGCTAGAGGAAA 5699 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 |||| || |||||| || |||||| |||| |||| ||| || |||| || | ||||| Sbjct 5698 CTCTAGTAGAGGCTTATAGTAGTTCTGACGTGTAAATTGATTGTTAAATATGCGCATAGG 5639 Query 679 GGC 681 ||| Sbjct 5638 GGC 5636 Score = 291 bits (322), Expect = 3e-76 Identities = 468/659 (71%), Gaps = 14/659 (2%) Strand=Plus/Minus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||| ||| | ||| ||| |||| ||||| | ||| |||| ||||||| |||||| Sbjct 14266 AAGCTTCTTTAATAAGTTAAGTAGTTTAGGAATACTGCTTAAAATAGGAGGTATATTTCT 14207 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||||| || |||||| |||||||| ||||||||| || |||||| || Sbjct 14206 TCTAAAGCTAAATATTAGCTAGAGACTAATAGCGCATAAGTAGAGTAATTAAAAGATAAA 14147 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||||||||| |||||| |||||| || | || |||||||| ||||||||| |||| || Sbjct 14146 AAGCACTTTAAAAAGAGGGTTAAATAGTATGTAAAATTGTTAAAAGGGAAGTGCTTATAA 14087 Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT-CGGCCGGTGCACTCTTCTGCGGTCAG 265 |||||||||| | ||| | | | || | | |||| || ||||| | || | || Sbjct 14086 CCAGACTTGCGCCTAGTGAATTACCTAGCTCTTGCGGCTGGGGCACTTTGCT-AGTATAG 14028 Query 266 GCCAGCATCAGCTCGGGCGGTCG-GATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGG 324 || ||||| |||| | || | | || ||| || |||| || || | ||| || | Sbjct 14027 GCTAGCATTAGCT-TGCCGTTAGAGACAAAAGCTTTAGGAACGTAGCTCTCTTTAGGAAG 13969 Query 325 TGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGAT 384 |||||||||| | | ||| | | || || |||| | ||| | ||||| Sbjct 13968 TGTTATAGCCTGTTGCATAATACCCTTTAGCAGG-CTAAGGTATGTGCT-TTGTAAGGAT 13911 Query 385 GCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTA 444 ||| ||||||| ||| | || || |||| ||||| ||| ||||||| |||| | || Sbjct 13910 GCTAGCGTAATAGTTATTAGTAACCTATCTTAAAACACAGACTAAGGAGT-TAACCT-TA 13853 Query 445 TG--CGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC 502 || ||||||| ||||| |||| | | ||||||| ||||| || | |||| || Sbjct 13852 TGTATAAGTGTTTAGGTGTTAAACTCCTATGCGTAATAAAAGTAAATGTAGGTAAGA--G 13795 Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562 | | | | ||| || || ||||| |||| | ||| ||||| |||||||| ||| Sbjct 13794 CTTTA--GCGCATTATTAACTAATCCTAATGTTCTTAGATAGATTTAAGTAAGAGTATAT 13737 Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 | | |||| ||||| ||| |||||||| || ||| ||| |||| |||||||||| | Sbjct 13736 AGGGTTAGACCTAAAAGAAGGTAAACTATGCGTGTATAAGGTAAAGCTAGAGGAAACTTT 13677 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || |||||| | || ||||| |||| |||| || | |||| || ||||| |||| Sbjct 13676 AGTAGAGGCTTGTAGTAGTTCTAACGTGTAAATTAATTATTAAATATGCGTATAAGGGC 13618 Score = 172 bits (190), Expect = 2e-40 Identities = 151/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||| ||| | ||| ||| |||| |||||| ||| |||| |||||| |||||| Sbjct 22248 AAGCTTCTTTAATAAGTTAAGTAGTTTAAGAATGCTGCTTAAAATAAGAGGTATATTTCT 22189 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||||| || |||||| |||||||| ||||||||| || |||||| || Sbjct 22188 TCTAAAGCTAAATATTAGCTAGAGACTAATAGCGCATAAGTAGAGTAATTAAAAGATAAA 22129 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||||||||| |||||| |||||| || |||| ||||| || |||| ||||| ||| || Sbjct 22128 AAGCACTTTAAAAAGAGGGTTAAATAGTACGTAAAATTATTAAAAGAGAAGCACTTATAA 22069 Query 207 CCAGACTT 214 |||||||| Sbjct 22068 CCAGACTT 22061 >seq151 Length=235 Score = 176 bits (194), Expect = 2e-41 Identities = 150/185 (81%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 493 GGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552 || |||| ||| | ||||||||| ||||||| | |||| | | || || || |||| Sbjct 51 GGCGGGATCCCTCGCGGGTGCACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGT 110 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| |||| |||||||||||||||||||||||||||||| |||| ||||||| Sbjct 111 GTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGTAAAGCCAG 170 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||||||||||||| || ||||||| | ||| ||||||||||| ||||| | ||||| Sbjct 171 AGGAAACTCTGGTGGAAGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGG 230 Query 673 TATAG 677 ||||| Sbjct 231 TATAG 235 >seq92 Length=26029 Score = 114 bits (126), Expect = 5e-23 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||| ||| | ||| ||| |||| ||| | || |||| |||||| |||||| Sbjct 7664 AAGCTTCTTTAATAAGTTAAGTAGTTTAAAAATACTACTTAAAATAAGAGGTATATTTCT 7605 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||||| || | |||| |||| | ||||| ||| || |||||| || Sbjct 7604 TCTAAAGCTAAATATTAGCTAAAGACTAATAGTATATAAGTAAAGTAATTAAAAGATAAA 7545 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||| ||||| ||| || |||||| || | | ||||| || ||||||||| ||| || Sbjct 7544 AAGTACTTTAAAAAAAGGGTTAAATAGTATATAAAATTATTAAAAGGGAAGTACTTATAA 7485 Query 207 CCAGACTT 214 | |||||| Sbjct 7484 CTAGACTT 7477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079989789800