Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq347 713 0.0
seq3 361 2e-97
seq151 176 2e-41
seq92 114 5e-23
>seq347
Length=5318
Score = 713 bits (790), Expect = 0.0
Identities = 561/664 (84%), Gaps = 12/664 (2%)
Strand=Plus/Plus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||
Sbjct 1776 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATAT 1835
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 1895
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 1896 TGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTT 1955
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCGG 261
| ||||||||||| | | || ||| || || | | |||| || ||||| | | | |
Sbjct 1956 GTGACCAGACTTGCGCCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTTGCCG-GC 2014
Query 262 TCAGGCCAGCATCAGCT--CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319
|||||||||||||||| | | ||| ||| ||| || | |||| || || | |||||
Sbjct 2015 ACAGGCCAGCATCAGCTTGCCGTCGG--GGACAAAAGCTTCAGGAACGTAGCTCTCTTCG 2072
Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379
||| ||||||||||| | | ||| | || | || ||||||| |||||||| ||
Sbjct 2073 GGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGC-GGGCTGAGGTACGCGCTCC-GCA 2130
Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439
||||||||||||||||||| | |||| ||||||||| |||||||||||||||||| | |
Sbjct 2131 AGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCAACC 2190
Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499
| | ||||||||||||||||| |||||| | ||||||||||||||||||| ||||| ||
Sbjct 2191 TTATGTGCGAGTGTTTGGGTGTTAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGA 2250
Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559
| || ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2251 ----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAAGAGCA 2306
Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619
|| | | |||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 2307 TATAGGGTTGGACCCGAAAGAAGGTGAACTATGCGTGTATAGGGTGAAGCCAGAGGAAAC 2366
Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
|||||||||||||||||||||||||| ||||||||||||||||||||| || | || |||
Sbjct 2367 TCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGCGCATGGGG 2426
Query 680 GCGA 683
||||
Sbjct 2427 GCGA 2430
>seq3
Length=27607
Score = 361 bits (400), Expect = 2e-97
Identities = 486/663 (73%), Gaps = 14/663 (2%)
Strand=Plus/Minus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| |||||| || | ||| ||| |||||||||||| ||| |||| ||||||| ||
Sbjct 6288 TGTAAAGCTCTTTTAATAAGTTAAGTAGTTTGGGAATGCTGCTTAAAATAGGAGGTATAT 6229
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
|||||||||||||||||||| || |||||| |||||||| ||||||||| || |||||
Sbjct 6228 TTCTTCTAAAGCTAAATATTAGCTAGAGACTAATAGCGCATAAGTAGAGTAATTAAAAGA 6169
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
| ||||||||||| |||||| |||||| || | || |||||||| ||||||||||||||
Sbjct 6168 TAAAAAGCACTTTAAAAAGAGGGTTAAATAGTATGTAAAATTGTTAAAAGGGAAGCGCTT 6109
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT-CGGCCGGTGCACTCTTCTGCGG 261
| |||||||||| | | || | | | || | | ||| | ||||| | ||| |
Sbjct 6108 GTAACCAGACTTACGCCTGGTGAATTACCTAGCTCTTGTGGCTAGGGCACTTTGCTG-GC 6050
Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCG-GATAAAGGCCCCGGGAATGTGGCCCCCTTCGG 320
|||||||||| |||| | || | | || ||| || |||| || || | ||| |
Sbjct 6049 ATAGGCCAGCATTAGCT-TGCCGTTAGAGACAAAAGCTTTAGGAACGTAGCTCTCTTTAG 5991
Query 321 GGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTA 380
|| ||||||||||| | | ||| | | | || || |||| | ||||| | |
Sbjct 5990 GGAGTGTTATAGCCTGTTGCATAATACCCTTTGGCAGG-CTAAGGTATGTGCTCC-GTAA 5933
Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440
||||||||||||||||||| | || | || ||||| ||||| ||| ||||||| ||||
Sbjct 5932 GGATGCTGGCGTAATGGTTATTAGTGACCTGTCTTAAAACACAGACTAAGGAGT-TAACC 5874
Query 441 TCTATGCG--AGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498
| |||| | ||||||| ||||| ||||| | ||||||| ||||| |||| ||||| |
Sbjct 5873 T-TATGTGTAAGTGTTTAGGTGTTAAACCTCTATGCGTAATAAAAGTAAACGCAGGTGAG 5815
Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558
| | | | || || || || ||||| |||| | ||| ||||| ||||||||
Sbjct 5814 A--GCTTTA--GTACATTATTAACTAATCCTAATGTTCTTAGATAGATTTAAGTAAGAGT 5759
Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618
||| | | |||| ||||| ||| ||||||| | ||| |||||||| ||||||||
Sbjct 5758 ATATAGGGTTAGACCTAAAAGAAGGTAAACTATGTGTATATAAGGTGAAGCTAGAGGAAA 5699
Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678
|||| || |||||| || |||||| |||| |||| ||| || |||| || | |||||
Sbjct 5698 CTCTAGTAGAGGCTTATAGTAGTTCTGACGTGTAAATTGATTGTTAAATATGCGCATAGG 5639
Query 679 GGC 681
|||
Sbjct 5638 GGC 5636
Score = 291 bits (322), Expect = 3e-76
Identities = 468/659 (71%), Gaps = 14/659 (2%)
Strand=Plus/Minus
Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86
||||| ||| | ||| ||| |||| ||||| | ||| |||| ||||||| ||||||
Sbjct 14266 AAGCTTCTTTAATAAGTTAAGTAGTTTAGGAATACTGCTTAAAATAGGAGGTATATTTCT 14207
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
|||||||||||||||| || |||||| |||||||| ||||||||| || |||||| ||
Sbjct 14206 TCTAAAGCTAAATATTAGCTAGAGACTAATAGCGCATAAGTAGAGTAATTAAAAGATAAA 14147
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206
||||||||| |||||| |||||| || | || |||||||| ||||||||| |||| ||
Sbjct 14146 AAGCACTTTAAAAAGAGGGTTAAATAGTATGTAAAATTGTTAAAAGGGAAGTGCTTATAA 14087
Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT-CGGCCGGTGCACTCTTCTGCGGTCAG 265
|||||||||| | ||| | | | || | | |||| || ||||| | || | ||
Sbjct 14086 CCAGACTTGCGCCTAGTGAATTACCTAGCTCTTGCGGCTGGGGCACTTTGCT-AGTATAG 14028
Query 266 GCCAGCATCAGCTCGGGCGGTCG-GATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGG 324
|| ||||| |||| | || | | || ||| || |||| || || | ||| || |
Sbjct 14027 GCTAGCATTAGCT-TGCCGTTAGAGACAAAAGCTTTAGGAACGTAGCTCTCTTTAGGAAG 13969
Query 325 TGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGAT 384
|||||||||| | | ||| | | || || |||| | ||| | |||||
Sbjct 13968 TGTTATAGCCTGTTGCATAATACCCTTTAGCAGG-CTAAGGTATGTGCT-TTGTAAGGAT 13911
Query 385 GCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTA 444
||| ||||||| ||| | || || |||| ||||| ||| ||||||| |||| | ||
Sbjct 13910 GCTAGCGTAATAGTTATTAGTAACCTATCTTAAAACACAGACTAAGGAGT-TAACCT-TA 13853
Query 445 TG--CGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC 502
|| ||||||| ||||| |||| | | ||||||| ||||| || | |||| ||
Sbjct 13852 TGTATAAGTGTTTAGGTGTTAAACTCCTATGCGTAATAAAAGTAAATGTAGGTAAGA--G 13795
Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562
| | | | ||| || || ||||| |||| | ||| ||||| |||||||| |||
Sbjct 13794 CTTTA--GCGCATTATTAACTAATCCTAATGTTCTTAGATAGATTTAAGTAAGAGTATAT 13737
Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622
| | |||| ||||| ||| |||||||| || ||| ||| |||| |||||||||| |
Sbjct 13736 AGGGTTAGACCTAAAAGAAGGTAAACTATGCGTGTATAAGGTAAAGCTAGAGGAAACTTT 13677
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|| |||||| | || ||||| |||| |||| || | |||| || ||||| ||||
Sbjct 13676 AGTAGAGGCTTGTAGTAGTTCTAACGTGTAAATTAATTATTAAATATGCGTATAAGGGC 13618
Score = 172 bits (190), Expect = 2e-40
Identities = 151/188 (80%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86
||||| ||| | ||| ||| |||| |||||| ||| |||| |||||| ||||||
Sbjct 22248 AAGCTTCTTTAATAAGTTAAGTAGTTTAAGAATGCTGCTTAAAATAAGAGGTATATTTCT 22189
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
|||||||||||||||| || |||||| |||||||| ||||||||| || |||||| ||
Sbjct 22188 TCTAAAGCTAAATATTAGCTAGAGACTAATAGCGCATAAGTAGAGTAATTAAAAGATAAA 22129
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206
||||||||| |||||| |||||| || |||| ||||| || |||| ||||| ||| ||
Sbjct 22128 AAGCACTTTAAAAAGAGGGTTAAATAGTACGTAAAATTATTAAAAGAGAAGCACTTATAA 22069
Query 207 CCAGACTT 214
||||||||
Sbjct 22068 CCAGACTT 22061
>seq151
Length=235
Score = 176 bits (194), Expect = 2e-41
Identities = 150/185 (81%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 493 GGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552
|| |||| ||| | ||||||||| ||||||| | |||| | | || || || ||||
Sbjct 51 GGCGGGATCCCTCGCGGGTGCACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGT 110
Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612
|||||| |||| |||||||||||||||||||||||||||||| |||| |||||||
Sbjct 111 GTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGTAAAGCCAG 170
Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672
|||||||||||||||| || ||||||| | ||| ||||||||||| ||||| | |||||
Sbjct 171 AGGAAACTCTGGTGGAAGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGG 230
Query 673 TATAG 677
|||||
Sbjct 231 TATAG 235
>seq92
Length=26029
Score = 114 bits (126), Expect = 5e-23
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86
||||| ||| | ||| ||| |||| ||| | || |||| |||||| ||||||
Sbjct 7664 AAGCTTCTTTAATAAGTTAAGTAGTTTAAAAATACTACTTAAAATAAGAGGTATATTTCT 7605
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
|||||||||||||||| || | |||| |||| | ||||| ||| || |||||| ||
Sbjct 7604 TCTAAAGCTAAATATTAGCTAAAGACTAATAGTATATAAGTAAAGTAATTAAAAGATAAA 7545
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206
||| ||||| ||| || |||||| || | | ||||| || ||||||||| ||| ||
Sbjct 7544 AAGTACTTTAAAAAAAGGGTTAAATAGTATATAAAATTATTAAAAGGGAAGTACTTATAA 7485
Query 207 CCAGACTT 214
| ||||||
Sbjct 7484 CTAGACTT 7477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079989789800
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