Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq347 358 1e-96
seq3 232 1e-58
seq92 107 3e-21
>seq347
Length=5318
Score = 358 bits (396), Expect = 1e-96
Identities = 237/259 (92%), Gaps = 3/259 (1%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 736 TACTCGCTGGCTCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 677
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 676 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 618
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 617 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 559
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 558 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 499
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 498 AAAGAGCTCTCAATCTGTC 480
>seq3
Length=27607
Score = 232 bits (256), Expect = 1e-58
Identities = 196/240 (82%), Gaps = 1/240 (0%)
Strand=Plus/Plus
Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77
||| || | |||||| |||| |||| ||||||||| || |||||||||||||| ||| ||
Sbjct 7345 AGTATAACACGCGTGTGGCCTAGAATATCTAAGGGTATTACAGACCTGTTATTACCTTAA 7404
Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGAT 137
||||| || |||| |||| ||||||||||||||||||||||| | |||| |||
Sbjct 7405 ACTTCTATCGGCTT-AAGCTAATAGTCCCTCTAAGAAGCCAGCATACTACCAAAGTAATA 7463
Query 138 GGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCC 197
|||||||||||||||||||||||| || |||||| |||||| ||| |||| ||||
Sbjct 7464 CAGGCTATTTAGCAGGTTAAGGTCTCATTTGTTATCATAATTAAGTAGATAAATTACTCT 7523
Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
|| |||||||||| || |||||| || ||| ||| ||||||||||||||| | |||||||
Sbjct 7524 ACTAACTAAGAACAGCTATGCACTACTACCTATAAAATCAAGAAAGAGCTCTTAATCTGT 7583
Score = 168 bits (186), Expect = 1e-39
Identities = 182/240 (76%), Gaps = 1/240 (0%)
Strand=Plus/Plus
Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77
||| || ||||||| | ||| |||| |||||| ||||| |||||||| ||||| ||| ||
Sbjct 15327 AGTATAACGCGCGTACAGCCTAGAATATCTAAAGGCATTACAGACCTATTATTACCTTAA 15386
Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGAT 137
||||| ||| ||| |||| ||||||| |||||||||||||| | || | |||
Sbjct 15387 ACTTCTATTAGCTT-AAGCTAATAGTCTTTCTAAGAAGCCAGCATACTACTAAAGTAATA 15445
Query 138 GGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCC 197
|||||||||| | |||||||||| || |||| |||||| ||| ||||||||
Sbjct 15446 CAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTAAGTAGATAAATCACTTT 15505
Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
|| |||||| |||||| || || || ||| | | ||| ||||||||||| | ||| |||
Sbjct 15506 ACTAACTAAAAACGGCTATATACTACTACCTACAAAATTAAGAAAGAGCTCTTAATTTGT 15565
Score = 152 bits (168), Expect = 8e-35
Identities = 182/246 (74%), Gaps = 1/246 (0%)
Strand=Plus/Plus
Query 8 TGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 67
||||| || ||| || | |||||| ||| |||| ||||||||| || | |||||| ||
Sbjct 23299 TGGCTTTGTTAGTATAACATGCGTGCAGCCTAGAATATCTAAGGGTATTATAGACCTATT 23358
Query 68 ATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC 127
||| | | ||||||| ||| ||| |||| ||||||| ||||||||||| || ||
Sbjct 23359 ATTACTTTAAACTTCTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAGCTAGTGTATTAC 23417
Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| ||| |||||||||| | |||||||||| ||| |||| |||||| |||
Sbjct 23418 TAAAGTAATACAGGCTATTTAGTAAGTTAAGGTCTTGTTTATTATTATAATTAAGTAGAT 23477
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
|||| ||| || ||||||||||||| || || || || ||| ||| |||||||||||
Sbjct 23478 AAATTACTTTACTAACTAAGAACGGCTATATACTACTACTTATAAAATTAAGAAAGAGCT 23537
Query 248 ATCAAT 253
| |||
Sbjct 23538 TTTAAT 23543
>seq92
Length=26029
Score = 107 bits (118), Expect = 3e-21
Identities = 156/219 (71%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 35 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAA 94
||| |||| |||||| || || | | || | ||||| || |||||| ||| ||| ||
Sbjct 8742 GCCTAGAATATCTAAAGGTATTATAAACTTATTATTATCTTAAACTTTTATTAGCTT-AA 8800
Query 95 GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGT 154
|| ||||||| ||||||||||| || || | ||| |||||||||| | ||
Sbjct 8801 GCTAATAGTCTCTCTAAGAAGCTAGTATATTACTAAAGTAATATAGGCTATTTAGTAAGT 8860
Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214
|||||||| || |||| |||||| ||| |||| ||| || ||||||||| ||
Sbjct 8861 TAAGGTCTTATTTATTATTATAATTAAGTAGATAAATTACTTTACTAACTAAGAATAGCT 8920
Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|| || || ||| ||| ||| |||||| |||| | |||
Sbjct 8921 ATATACTACTACCTATAAAATTAAGAAAAAGCTTTTAAT 8959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796796325756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |