Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq347 358 1e-96 seq3 232 1e-58 seq92 107 3e-21 >seq347 Length=5318 Score = 358 bits (396), Expect = 1e-96 Identities = 237/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 736 TACTCGCTGGCTCCGTCAGTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 677 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 676 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 618 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 617 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 559 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 558 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 499 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 498 AAAGAGCTCTCAATCTGTC 480 >seq3 Length=27607 Score = 232 bits (256), Expect = 1e-58 Identities = 196/240 (82%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||| || | |||||| |||| |||| ||||||||| || |||||||||||||| ||| || Sbjct 7345 AGTATAACACGCGTGTGGCCTAGAATATCTAAGGGTATTACAGACCTGTTATTACCTTAA 7404 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGAT 137 ||||| || |||| |||| ||||||||||||||||||||||| | |||| ||| Sbjct 7405 ACTTCTATCGGCTT-AAGCTAATAGTCCCTCTAAGAAGCCAGCATACTACCAAAGTAATA 7463 Query 138 GGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCC 197 |||||||||||||||||||||||| || |||||| |||||| ||| |||| |||| Sbjct 7464 CAGGCTATTTAGCAGGTTAAGGTCTCATTTGTTATCATAATTAAGTAGATAAATTACTCT 7523 Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 || |||||||||| || |||||| || ||| ||| ||||||||||||||| | ||||||| Sbjct 7524 ACTAACTAAGAACAGCTATGCACTACTACCTATAAAATCAAGAAAGAGCTCTTAATCTGT 7583 Score = 168 bits (186), Expect = 1e-39 Identities = 182/240 (76%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||| || ||||||| | ||| |||| |||||| ||||| |||||||| ||||| ||| || Sbjct 15327 AGTATAACGCGCGTACAGCCTAGAATATCTAAAGGCATTACAGACCTATTATTACCTTAA 15386 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGAT 137 ||||| ||| ||| |||| ||||||| |||||||||||||| | || | ||| Sbjct 15387 ACTTCTATTAGCTT-AAGCTAATAGTCTTTCTAAGAAGCCAGCATACTACTAAAGTAATA 15445 Query 138 GGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCC 197 |||||||||| | |||||||||| || |||| |||||| ||| |||||||| Sbjct 15446 CAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTAAGTAGATAAATCACTTT 15505 Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 || |||||| |||||| || || || ||| | | ||| ||||||||||| | ||| ||| Sbjct 15506 ACTAACTAAAAACGGCTATATACTACTACCTACAAAATTAAGAAAGAGCTCTTAATTTGT 15565 Score = 152 bits (168), Expect = 8e-35 Identities = 182/246 (74%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 8 TGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 67 ||||| || ||| || | |||||| ||| |||| ||||||||| || | |||||| || Sbjct 23299 TGGCTTTGTTAGTATAACATGCGTGCAGCCTAGAATATCTAAGGGTATTATAGACCTATT 23358 Query 68 ATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC 127 ||| | | ||||||| ||| ||| |||| ||||||| ||||||||||| || || Sbjct 23359 ATTACTTTAAACTTCTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAGCTAGTGTATTAC 23417 Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | ||| |||||||||| | |||||||||| ||| |||| |||||| ||| Sbjct 23418 TAAAGTAATACAGGCTATTTAGTAAGTTAAGGTCTTGTTTATTATTATAATTAAGTAGAT 23477 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||| ||| || ||||||||||||| || || || || ||| ||| ||||||||||| Sbjct 23478 AAATTACTTTACTAACTAAGAACGGCTATATACTACTACTTATAAAATTAAGAAAGAGCT 23537 Query 248 ATCAAT 253 | ||| Sbjct 23538 TTTAAT 23543 >seq92 Length=26029 Score = 107 bits (118), Expect = 3e-21 Identities = 156/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 35 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAA 94 ||| |||| |||||| || || | | || | ||||| || |||||| ||| ||| || Sbjct 8742 GCCTAGAATATCTAAAGGTATTATAAACTTATTATTATCTTAAACTTTTATTAGCTT-AA 8800 Query 95 GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGT 154 || ||||||| ||||||||||| || || | ||| |||||||||| | || Sbjct 8801 GCTAATAGTCTCTCTAAGAAGCTAGTATATTACTAAAGTAATATAGGCTATTTAGTAAGT 8860 Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 |||||||| || |||| |||||| ||| |||| ||| || ||||||||| || Sbjct 8861 TAAGGTCTTATTTATTATTATAATTAAGTAGATAAATTACTTTACTAACTAAGAATAGCT 8920 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 || || || ||| ||| ||| |||||| |||| | ||| Sbjct 8921 ATATACTACTACCTATAAAATTAAGAAAAAGCTTTTAAT 8959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796796325756