Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq347 493 2e-137 seq3 340 3e-91 >seq347 Length=5318 Score = 493 bits (546), Expect = 2e-137 Identities = 287/295 (97%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||||| Sbjct 4517 TACTAAGCTCAATTACCATTGCGACGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 4459 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4458 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 4399 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 4398 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 4339 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4338 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 4279 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4278 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 4224 >seq3 Length=27607 Score = 340 bits (376), Expect = 3e-91 Identities = 253/295 (86%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| ||| | | | |||| ||||||||||||||||||| ||| | Sbjct 3547 TACTAAGCTTAATTACTATTATAACAAAG-TCATTAGTAGGGTAAAACTAACCTATCTTA 3605 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || |||||||||||||| ||||||||||||||| || ||||||| |||||||||| | Sbjct 3606 CAACAGTCTAAACCCAGCTTACGTTCCCTATTAGTAAGTAAACAATCTAACGCTTACCAA 3665 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||| |||| |||| |||||| |||| ||||||| ||||||||||||| |||| Sbjct 3666 ATTCTGCTTTAGTATAATAGAAAGAGCTAACATTGAAGGATTAAAAAGCAACGTCACTAT 3725 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||| ||| ||||||||||||||||||| | ||||||||||| ||||||||||||| Sbjct 3726 AAACGCTTAGCTACCACAAGCCAGTTATCCCTATAGTAACTTTTCTAGCACCTCTAGCCT 3785 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||| ||||||||||||||| |||||||||||||| || |||| ||||||| Sbjct 3786 CAAATTTCAAGGGACTAAAGGATCAATAGGCCACACTTTTATAGTTTATATTCAC 3840 Score = 307 bits (340), Expect = 2e-81 Identities = 246/295 (83%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| ||| | ||| || |||| |||||||||||||||||| | Sbjct 11529 TACTAAGCTTAATTACTATTATAATAA-GGTTATTAGTAAGGTAAAACTAACCTGTCTTA 11587 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | || ||||||||| |||| ||||||||||||||| ||| ||||||| ||||||||| | Sbjct 11588 TAACAGTCTAAACCTAGCTTACGTTCCCTATTAGTAGGTAAACAATCTAACGCTTACTAA 11647 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||| |||| ||| ||||||| |||| ||| || ||||||||||||| |||| Sbjct 11648 ATTCTGCTTTAGTATAATAAGAAGAGCTAACATTAAAGAATTAAAAAGCAACGTCACTAT 11707 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||| |||||||||||| |||||||||| | ||||||||||| ||||||||||||| Sbjct 11708 AAACGCTTAGCTGCCACAAGCTAGTTATCCCTATAGTAACTTTTCTAGCACCTCTAGCCT 11767 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||| || ||||||||||| |||||||||||||| || |||| ||||||| Sbjct 11768 TAAATTTTAAGAGACTAAAGGATTAATAGGCCACACTTTTATAGTTTATATTCAC 11822 Score = 244 bits (270), Expect = 2e-62 Identities = 230/292 (79%), Gaps = 1/292 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| |||| | ||| || |||| |||||||||||||| ||| | Sbjct 19511 TACTAAGCTTAATTACTATTGTAATAA-GGTTATTAGTAAGGTAAAACTAACCTATCTTA 19569 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | |||||||||||| |||| ||||||| ||||||| ||| || |||| || ||||| | Sbjct 19570 TAACGGTCTAAACCTAGCTTACGTTCCTTATTAGTAGGTAAATAATCTAATACTTACTAA 19629 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||| |||| ||| ||||||| | || ||| || |||||| || || ||||| Sbjct 19630 ATTCTGCTTTAGTATAATAAGAAGAGCTAATATTAAAGAATTAAAAAGTAATGTTGCTAT 19689 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||| ||| | | |||| ||||||| || | ||||||||||| |||||| |||||| Sbjct 19690 AAACGCTTAGCTACTATAAGCTAGTTATCTCTATAGTAACTTTTCTAGCACCTTTAGCCT 19749 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 |||||| || |||||||| || |||||| ||||||| || |||| |||| Sbjct 19750 TAAATTTTAAGAGACTAAAGAATTAATAGGCTACACTTTTATAGTTTATATT 19801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854395933056