Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq347 493 2e-137
seq3 340 3e-91
>seq347
Length=5318
Score = 493 bits (546), Expect = 2e-137
Identities = 287/295 (97%), Gaps = 1/295 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 4517 TACTAAGCTCAATTACCATTGCGACGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 4459
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4458 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 4399
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 4398 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 4339
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4338 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 4279
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4278 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 4224
>seq3
Length=27607
Score = 340 bits (376), Expect = 3e-91
Identities = 253/295 (86%), Gaps = 1/295 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||| ||| | | | |||| ||||||||||||||||||| ||| |
Sbjct 3547 TACTAAGCTTAATTACTATTATAACAAAG-TCATTAGTAGGGTAAAACTAACCTATCTTA 3605
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|| |||||||||||||| ||||||||||||||| || ||||||| |||||||||| |
Sbjct 3606 CAACAGTCTAAACCCAGCTTACGTTCCCTATTAGTAAGTAAACAATCTAACGCTTACCAA 3665
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||| |||| |||| |||||| |||| ||||||| ||||||||||||| ||||
Sbjct 3666 ATTCTGCTTTAGTATAATAGAAAGAGCTAACATTGAAGGATTAAAAAGCAACGTCACTAT 3725
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||| ||| ||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 3726 AAACGCTTAGCTACCACAAGCCAGTTATCCCTATAGTAACTTTTCTAGCACCTCTAGCCT 3785
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||||||| ||||||||||||||| |||||||||||||| || |||| |||||||
Sbjct 3786 CAAATTTCAAGGGACTAAAGGATCAATAGGCCACACTTTTATAGTTTATATTCAC 3840
Score = 307 bits (340), Expect = 2e-81
Identities = 246/295 (83%), Gaps = 1/295 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||| ||| | ||| || |||| |||||||||||||||||| |
Sbjct 11529 TACTAAGCTTAATTACTATTATAATAA-GGTTATTAGTAAGGTAAAACTAACCTGTCTTA 11587
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
| || ||||||||| |||| ||||||||||||||| ||| ||||||| ||||||||| |
Sbjct 11588 TAACAGTCTAAACCTAGCTTACGTTCCCTATTAGTAGGTAAACAATCTAACGCTTACTAA 11647
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||| |||| ||| ||||||| |||| ||| || ||||||||||||| ||||
Sbjct 11648 ATTCTGCTTTAGTATAATAAGAAGAGCTAACATTAAAGAATTAAAAAGCAACGTCACTAT 11707
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||| |||||||||||| |||||||||| | ||||||||||| |||||||||||||
Sbjct 11708 AAACGCTTAGCTGCCACAAGCTAGTTATCCCTATAGTAACTTTTCTAGCACCTCTAGCCT 11767
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||||| || ||||||||||| |||||||||||||| || |||| |||||||
Sbjct 11768 TAAATTTTAAGAGACTAAAGGATTAATAGGCCACACTTTTATAGTTTATATTCAC 11822
Score = 244 bits (270), Expect = 2e-62
Identities = 230/292 (79%), Gaps = 1/292 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||| |||| | ||| || |||| |||||||||||||| ||| |
Sbjct 19511 TACTAAGCTTAATTACTATTGTAATAA-GGTTATTAGTAAGGTAAAACTAACCTATCTTA 19569
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
| |||||||||||| |||| ||||||| ||||||| ||| || |||| || ||||| |
Sbjct 19570 TAACGGTCTAAACCTAGCTTACGTTCCTTATTAGTAGGTAAATAATCTAATACTTACTAA 19629
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||| |||| ||| ||||||| | || ||| || |||||| || || |||||
Sbjct 19630 ATTCTGCTTTAGTATAATAAGAAGAGCTAATATTAAAGAATTAAAAAGTAATGTTGCTAT 19689
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||| ||| | | |||| ||||||| || | ||||||||||| |||||| ||||||
Sbjct 19690 AAACGCTTAGCTACTATAAGCTAGTTATCTCTATAGTAACTTTTCTAGCACCTTTAGCCT 19749
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
|||||| || |||||||| || |||||| ||||||| || |||| ||||
Sbjct 19750 TAAATTTTAAGAGACTAAAGAATTAATAGGCTACACTTTTATAGTTTATATT 19801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854395933056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |