Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq347 105 4e-21 seq3 73.4 2e-11 >seq347 Length=5318 Score = 105 bits (116), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||||| |||||| ||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 927 TCCGAAAGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 871 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||||||||| Sbjct 870 GGCAGGGACGTAAT-CAACGCAAGCT 846 >seq3 Length=27607 Score = 73.4 bits (80), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||||| || |||||||||||| || |||||||| || || ||||| || ||||||| Sbjct 7137 TCCGAAAGC-CTTACTAAGCCATTTAAT-CGGTAGTA-GCAACAGGCGGTGTATACAAAG 7193 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 ||||| ||||||| ||| |||||| Sbjct 7194 GGCAGAAACGTAAT-TAACACAAGCT 7218 Score = 73.4 bits (80), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||||| || ||||||| |||| ||| | ||||| || || ||||| || ||||||| Sbjct 15119 TCCGAAAGC-CTTACTAAGCTATTTAATTAG-TAGTA-GCAACAGGCGGTGTATACAAAG 15175 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||| ||||| Sbjct 15176 GGCAGGGACGTAAT-TAACGTAAGCT 15200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300798657680