Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq347 105 4e-21
seq3 73.4 2e-11
>seq347
Length=5318
Score = 105 bits (116), Expect = 4e-21
Identities = 78/86 (91%), Gaps = 4/86 (5%)
Strand=Plus/Minus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||||||| |||||| ||||||| || ||||||||| ||||||||||| ||||||||||
Sbjct 927 TCCGAAAGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 871
Query 99 GGCAGGGACGTAATACAACGCAAGCT 124
|||||||||||||| |||||||||||
Sbjct 870 GGCAGGGACGTAAT-CAACGCAAGCT 846
>seq3
Length=27607
Score = 73.4 bits (80), Expect = 2e-11
Identities = 71/86 (83%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||||||| || |||||||||||| || |||||||| || || ||||| || |||||||
Sbjct 7137 TCCGAAAGC-CTTACTAAGCCATTTAAT-CGGTAGTA-GCAACAGGCGGTGTATACAAAG 7193
Query 99 GGCAGGGACGTAATACAACGCAAGCT 124
||||| ||||||| ||| ||||||
Sbjct 7194 GGCAGAAACGTAAT-TAACACAAGCT 7218
Score = 73.4 bits (80), Expect = 2e-11
Identities = 71/86 (83%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||||||| || ||||||| |||| ||| | ||||| || || ||||| || |||||||
Sbjct 15119 TCCGAAAGC-CTTACTAAGCTATTTAATTAG-TAGTA-GCAACAGGCGGTGTATACAAAG 15175
Query 99 GGCAGGGACGTAATACAACGCAAGCT 124
|||||||||||||| |||| |||||
Sbjct 15176 GGCAGGGACGTAAT-TAACGTAAGCT 15200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300798657680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |