Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq173 147 3e-33 seq3 131 2e-28 seq347 120 4e-25 >seq173 Length=2808 Score = 147 bits (162), Expect = 3e-33 Identities = 142/180 (79%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 18 AAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTG 77 ||||||| | |||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 1 AAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCGAGCATAGGCCTG 60 Query 78 CTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA-CCAATGAA- 135 | | || |||||||||||| |||| |||||||||||| |||| | ||||| ||| |||| Sbjct 61 CCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGGCACACCCAGTGAAG 120 Query 136 GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCCGTGAGGCGGACC 195 ||||| ||| ||| || | ||| | || |||| | ||| |||||||||||| Sbjct 121 GGCATGCGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCGGTGAGGCGGACC 180 >seq3 Length=27607 Score = 131 bits (144), Expect = 2e-28 Identities = 138/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 18 AAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTG 77 ||||||| | |||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 1 AAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCGAGCATAGGCCTG 60 Query 78 CTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACACCAATGAA-- 135 | | || |||||||||||| | || |||||||||||| |||| ||||||| | || Sbjct 61 CCTGGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGTTTCCCTAGCACACCTAGTAAAG 120 Query 136 GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCCGTGAGGCGGACC 195 ||||| ||| ||| ||| | ||| || | | ||| | ||| || |||| |||| Sbjct 121 GGCATGCGGTTCCACAAAGGGAAAGGCCTAGCCAGACTAGTGCACGCGGTAAGGCAGACC 180 Query 196 A 196 | Sbjct 181 A 181 Score = 109 bits (120), Expect = 7e-22 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || |||||| | |||||||||||||||||| || |||||||||| Sbjct 7971 CTAGAAACTAATAAAATAAAACCATACGTCCTATTCTATTATTTTATACTAATGTATTTA 8030 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | | |||||||||||| | || |||||||||||| ||||| ||| Sbjct 8031 AGCATAGGCCTGCCTAAAGCACTCTAATTTTTTTAAAGTAAAAGTCCTGTTTCCTTAGCA 8090 Query 126 CACCAATGAA--GGCATAC 142 |||| | || ||||||| Sbjct 8091 CACCTAGTAAAGGGCATAC 8109 Score = 96.9 bits (106), Expect = 4e-18 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || |||||| |||||| ||||||||||||| |||||||| |||| Sbjct 15953 CTAGAAACTAATAAAATAAAACTACACGTCTTATTCTATTATTCTATGCTAATATATTTA 16012 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTC 118 || || |||||| | || ||||||||||| | || |||||||||||| ||| Sbjct 16013 AGCATAGGCCTGCCTAGAGCACTCTAATTTATTTAAAGTAAAAGTCCTGTTTC 16065 Score = 84.2 bits (92), Expect = 3e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| |||||||||| ||||| |||| ||||||| || |||||||||| Sbjct 23935 CTAGAAACTAACAAAATAGAACTATACGTCTTATTTTATTATTTTATACTAATGTATTTA 23994 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 | || |||||| | | |||||||||||| | || |||||||| ||| |||| Sbjct 23995 AGTATAGGCCTGCCTAAAGCACTCTAATTTTTTTAAAGTAAAAGTTCTGTTTCC 24048 >seq347 Length=5318 Score = 120 bits (132), Expect = 4e-25 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 93 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 34 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTT 96 || || |||||| | || |||||||||||| Sbjct 33 AGCATAGGCCTGCCTGGAGCACTCTAATTTT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595197255384