Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq347 235 6e-60 seq3 179 4e-43 seq173 149 6e-34 seq92 120 3e-25 >seq347 Length=5318 Score = 235 bits (260), Expect = 6e-60 Identities = 155/170 (91%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 22 AAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAA 81 |||||||||||| | || | |||||||| ||||||||||||||| ||||||||||||||| Sbjct 1 AAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGAA 60 Query 82 TAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATA 141 ||||||||| ||||||||||||| |||||||||||||| |||||||||| |||| ||| | Sbjct 61 TAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG-CCGTAATGATTAATAGGGACA 119 Query 142 GTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 |||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 120 GTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 169 >seq3 Length=27607 Score = 179 bits (198), Expect = 4e-43 Identities = 155/191 (81%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||||| |||||||||||| | | | |||||||| |||| |||| Sbjct 8084 GGAAACAGGACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGCAGGCCTATGCTTAAATA 8025 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| || |||||||||||||||||| |||| |||||| | ||||||||||| | Sbjct 8024 CATTAGTATAAAATAATAGAATAGGACGTATGGTTTTATTTTATTAGTTTCTAGGACTG- 7966 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 ||||||| || |||| ||||||| |||| | |||||| |||| | | |||| |||||| Sbjct 7965 CCGTAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 7906 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 7905 TTAGATTTATT 7895 Score = 172 bits (190), Expect = 6e-41 Identities = 153/190 (81%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 2 GAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATAC 61 ||| ||||||||||||||| || ||||||||| | || | |||||||| |||| |||| Sbjct 16065 GAAACAGGACTTTTACTTTAAATAAATTAGAGTGCTCTAGGCAGGCCTATGCTTAAATAT 16006 Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC 121 |||| ||| ||||||||||||| |||||| ||| |||||| | ||||||||||| | | Sbjct 16005 ATTAGCATAGAATAATAGAATAAGACGTGTAGTTTTATTTTATTAGTTTCTAGGACTG-C 15947 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 ||||| || |||| ||||||| | || | |||||| |||| | |||||| ||||||| Sbjct 15946 TGTAATAATTAATAGGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTCT 15887 Query 182 TGGATTTATT 191 | |||||||| Sbjct 15886 TAGATTTATT 15877 Score = 156 bits (172), Expect = 4e-36 Identities = 150/191 (79%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||| ||||||||||| |||||||||||| | | | |||||||| | || |||| Sbjct 24048 GGAAACAGAACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGCAGGCCTATACTTAAATA 23989 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| || ||||||| |||| ||||| |||||||||||| |||||||||| | Sbjct 23988 CATTAGTATAAAATAATAAAATAAGACGTATAGTTCTATTTTGTTAGTTTCTAGGA-CTA 23930 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | ||||| || |||| ||||||| | || | |||||| |||| | |||||| |||||| Sbjct 23929 CTGTAATAATTAATAGGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTC 23870 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 23869 TTAGATTTATT 23859 Score = 143 bits (158), Expect = 3e-32 Identities = 93/102 (91%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||||||||||||| |||||||||||| | || | |||||||| |||||||||| Sbjct 102 GGAAACAGGACTTTTACTTTAAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 43 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT 102 ||||| |||||||||||||||||||||||| ||||||||||| Sbjct 42 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTT 1 >seq173 Length=2808 Score = 149 bits (164), Expect = 6e-34 Identities = 94/102 (92%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 102 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 43 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT 102 ||||| |||||||||||||||||||||||| ||||||||||| Sbjct 42 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTT 1 >seq92 Length=26029 Score = 120 bits (132), Expect = 3e-25 Identities = 139/185 (75%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC 66 |||||||||||||| ||||||||| || | | ||| |||||| |||| |||| |||| Sbjct 9457 AGGACTTTTACTTT-AAAAAATTAAAGTGCTTTAAGTAGGCCTATGCTTAAATATATTAG 9399 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 || ||||||| ||||| | | ||| |||||| | ||||||| || | | ||| Sbjct 9398 TATAAAATAATAAAATAGAATATATAGTTTTATTTTATTAGTTTCTAAGA-CTACTATAA 9340 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | || |||| ||||||| | || | |||||| |||| | |||||| |||||||| ||| Sbjct 9339 TAATTAATAAGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTCTTAGAT 9280 Query 187 TTATT 191 ||||| Sbjct 9279 TTATT 9275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511997639040