Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq347 235 6e-60
seq3 179 4e-43
seq173 149 6e-34
seq92 120 3e-25
>seq347
Length=5318
Score = 235 bits (260), Expect = 6e-60
Identities = 155/170 (91%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 22 AAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAA 81
|||||||||||| | || | |||||||| ||||||||||||||| |||||||||||||||
Sbjct 1 AAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGAA 60
Query 82 TAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATA 141
||||||||| ||||||||||||| |||||||||||||| |||||||||| |||| ||| |
Sbjct 61 TAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG-CCGTAATGATTAATAGGGACA 119
Query 142 GTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191
|||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 GTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 169
>seq3
Length=27607
Score = 179 bits (198), Expect = 4e-43
Identities = 155/191 (81%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| ||||||||||||||| |||||||||||| | | | |||||||| |||| ||||
Sbjct 8084 GGAAACAGGACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGCAGGCCTATGCTTAAATA 8025
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| || |||||||||||||||||| |||| |||||| | ||||||||||| |
Sbjct 8024 CATTAGTATAAAATAATAGAATAGGACGTATGGTTTTATTTTATTAGTTTCTAGGACTG- 7966
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
||||||| || |||| ||||||| |||| | |||||| |||| | | |||| ||||||
Sbjct 7965 CCGTAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTAAAATTC 7906
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 7905 TTAGATTTATT 7895
Score = 172 bits (190), Expect = 6e-41
Identities = 153/190 (81%), Gaps = 1/190 (1%)
Strand=Plus/Minus
Query 2 GAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATAC 61
||| ||||||||||||||| || ||||||||| | || | |||||||| |||| ||||
Sbjct 16065 GAAACAGGACTTTTACTTTAAATAAATTAGAGTGCTCTAGGCAGGCCTATGCTTAAATAT 16006
Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC 121
|||| ||| ||||||||||||| |||||| ||| |||||| | ||||||||||| | |
Sbjct 16005 ATTAGCATAGAATAATAGAATAAGACGTGTAGTTTTATTTTATTAGTTTCTAGGACTG-C 15947
Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181
||||| || |||| ||||||| | || | |||||| |||| | |||||| |||||||
Sbjct 15946 TGTAATAATTAATAGGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTCT 15887
Query 182 TGGATTTATT 191
| ||||||||
Sbjct 15886 TAGATTTATT 15877
Score = 156 bits (172), Expect = 4e-36
Identities = 150/191 (79%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| ||| ||||||||||| |||||||||||| | | | |||||||| | || ||||
Sbjct 24048 GGAAACAGAACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGCAGGCCTATACTTAAATA 23989
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| || ||||||| |||| ||||| |||||||||||| |||||||||| |
Sbjct 23988 CATTAGTATAAAATAATAAAATAAGACGTATAGTTCTATTTTGTTAGTTTCTAGGA-CTA 23930
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| ||||| || |||| ||||||| | || | |||||| |||| | |||||| ||||||
Sbjct 23929 CTGTAATAATTAATAGGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTC 23870
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 23869 TTAGATTTATT 23859
Score = 143 bits (158), Expect = 3e-32
Identities = 93/102 (91%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| ||||||||||||||| |||||||||||| | || | |||||||| ||||||||||
Sbjct 102 GGAAACAGGACTTTTACTTTAAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 43
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT 102
||||| |||||||||||||||||||||||| |||||||||||
Sbjct 42 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTT 1
>seq173
Length=2808
Score = 149 bits (164), Expect = 6e-34
Identities = 94/102 (92%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||||||||||||||||| | || | |||||||| ||||||||||
Sbjct 102 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 43
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTT 102
||||| |||||||||||||||||||||||| |||||||||||
Sbjct 42 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTT 1
>seq92
Length=26029
Score = 120 bits (132), Expect = 3e-25
Identities = 139/185 (75%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC 66
|||||||||||||| ||||||||| || | | ||| |||||| |||| |||| ||||
Sbjct 9457 AGGACTTTTACTTT-AAAAAATTAAAGTGCTTTAAGTAGGCCTATGCTTAAATATATTAG 9399
Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126
|| ||||||| ||||| | | ||| |||||| | ||||||| || | | |||
Sbjct 9398 TATAAAATAATAAAATAGAATATATAGTTTTATTTTATTAGTTTCTAAGA-CTACTATAA 9340
Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186
| || |||| ||||||| | || | |||||| |||| | |||||| |||||||| |||
Sbjct 9339 TAATTAATAAGGATAGTTAGAGGCATTAGTATTTAATTATTAAAGGTAAAATTCTTAGAT 9280
Query 187 TTATT 191
|||||
Sbjct 9279 TTATT 9275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511997639040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |