Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq347 446 3e-123
seq3 277 3e-72
seq92 73.4 7e-11
>seq347
Length=5318
Score = 446 bits (494), Expect = 3e-123
Identities = 286/309 (93%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||||||||||||||
Sbjct 571 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 630
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 690
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||| ||||||||| |||||| ||||| | || |||||||||
Sbjct 691 GATGTTCTGGGCCGCACGCGCGTTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 748
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 749 GAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 808
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 809 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 868
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 869 CCCTTTGTA 877
>seq3
Length=27607
Score = 277 bits (306), Expect = 3e-72
Identities = 246/305 (81%), Gaps = 2/305 (1%)
Strand=Plus/Minus
Query 24 GAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGG 83
|||||||||||||||||||||||| | |||||| | || ||||||||||||||
Sbjct 7489 GAGACCTTAACCTGCTAAATAGCCTGTATTACTTTGGTAGTATGCTGGCTTCTTAGAGGG 7430
Query 84 ACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATG 143
||||| ||| |||||||| ||||||| ||| |||||||||||||| || |||||||||
Sbjct 7429 ACTATTAGCTTAAGCCGATAGAAGTTTAAGGTAATAACAGGTCTGTAATACCCTTAGATA 7370
Query 144 TTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAG 203
|||| |||| |||||| | || ||| | | ||||| ||| | || ||| ||||||||
Sbjct 7369 TTCTAGGCCACACGCGTGTTATACTAATAAAGCCAGTAAGTAC-TC-TCTTAGCCGGAAG 7312
Query 204 GTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCT 263
| || ||||||||||||||||||||| | || ||||||||| |||| ||||||||||||
Sbjct 7311 GCCTAGGTAATCTTGTTAAACTCTGTTATACTAGGGATAGAGTATTGTAATTATTGCTCT 7252
Query 264 TCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCT 323
| || |||||| |||||||||||| || || ||| | ||| ||||||| |||||||
Sbjct 7251 TTAATAAGGAATCCCTAGTAAGCGCAAGTTATTAGCTTGTGTTAATTACGTTTCTGCCCT 7192
Query 324 TTGTA 328
|||||
Sbjct 7191 TTGTA 7187
Score = 181 bits (200), Expect = 2e-43
Identities = 224/304 (74%), Gaps = 2/304 (1%)
Strand=Plus/Minus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||||||||| | |||||||||| | |||| | | || ||||||||||| ||
Sbjct 15470 AGACCTTAACTTACTAAATAGCCTGTATTACTTTAGTAGTATGCTGGCTTCTTAGAAAGA 15411
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
|||| ||| |||| || ||||||| ||| ||||| |||||||| ||||| |||||| |
Sbjct 15410 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTCTGTAATGCCTTTAGATAT 15351
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
||| ||| | ||||||| || ||| | | ||| | ||| | || ||| || ||||
Sbjct 15350 TCTAGGCTGTACGCGCGTTATACTAATAAAGCTAGTAAGTAC-TC-TCTTAGCTAAAAGG 15293
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| ||||||| | | | || |||| || ||| ||||||| || ||
Sbjct 15292 CCTAGGTAATCTTATTAAACTTTATTATACTAAAGATAAAGTATTATAATTATTACTTTT 15233
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
|| |||||| |||||||||| || || ||| |||| |||||||||||||||||
Sbjct 15232 TAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTACGTTAATTACGTCCCTGCCCTT 15173
Query 325 TGTA 328
||||
Sbjct 15172 TGTA 15169
Score = 181 bits (200), Expect = 2e-43
Identities = 224/304 (74%), Gaps = 2/304 (1%)
Strand=Plus/Minus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||||||||| | |||||||||| | |||| | | | ||||||||||| ||
Sbjct 23452 AGACCTTAACTTACTAAATAGCCTGTATTACTTTAGTAATACACTAGCTTCTTAGAGAGA 23393
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144
|||| ||| |||| || ||||||| | | ||||| |||||| | || ||||||||| |
Sbjct 23392 CTATTAGCTTAAGCTAATAGAAGTTTAAAGTAATAATAGGTCTATAATACCCTTAGATAT 23333
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
||| ||| |||||| | || ||| ||| ||||| ||| | || |||| || |||||
Sbjct 23332 TCTAGGCTGCACGCATGTTATACTAACAAAGCCAGTAAGTAC-TC-CCTTAGCTAGAAGG 23275
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
|| ||||||||| ||||||||||| | || ||||| || ||| ||||||| |||||
Sbjct 23274 CCTAGGTAATCTTATTAAACTCTGTTATACTAAGGATAAAGTATTATAATTATTACTCTT 23215
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
|| || ||| |||||||||| ||||| ||| ||| |||||||| || |||||
Sbjct 23214 TAATAAGAAATCCCTAGTAAGCATAAGTCATTAGCTTATGTTAATTACGTCTCTACCCTT 23155
Query 325 TGTA 328
| ||
Sbjct 23154 TATA 23151
>seq92
Length=26029
Score = 73.4 bits (80), Expect = 7e-11
Identities = 163/244 (67%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||||||||| |||||| ||| |||| || |||||| || ||||| | || | |
Sbjct 8822 GCTTCTTAGAGAGACTATTAGCTTAAGCTAATAAAAGTTTAAGATAATAATAAGTTTATA 8763
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|| || |||||| |||| ||| | | || ||| | | ||| | ||| | |
Sbjct 8762 ATACCTTTAGATATTCTAGGCTATATATACATTATACTAATAAAGCTAGTAAGTACTT-- 8705
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| || ||| | || ||||||||| ||||||| | | | || ||| || |||
Sbjct 8704 TCTTAGCTAGAAAGCCTAGGTAATCTTATTAAACTTTATTATACTAAAAATAAAGTATTA 8645
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||| ||||| || | ||| | |||||||| || || ||| |||| |||
Sbjct 8644 TAATTATTACTCTTTAATAAAAAATCCTTAGTAAGCATAAGTTATTAGCTTACGTTAATT 8585
Query 311 ACGT 314
| ||
Sbjct 8584 ATGT 8581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947195491328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |