Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq347 446 3e-123 seq3 277 3e-72 seq92 73.4 7e-11 >seq347 Length=5318 Score = 446 bits (494), Expect = 3e-123 Identities = 286/309 (93%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | |||||||||||||| Sbjct 571 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 630 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 690 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||| ||||||||| |||||| ||||| | || ||||||||| Sbjct 691 GATGTTCTGGGCCGCACGCGCGTTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCG 748 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 749 GAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 808 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 809 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 868 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 869 CCCTTTGTA 877 >seq3 Length=27607 Score = 277 bits (306), Expect = 3e-72 Identities = 246/305 (81%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 24 GAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGG 83 |||||||||||||||||||||||| | |||||| | || |||||||||||||| Sbjct 7489 GAGACCTTAACCTGCTAAATAGCCTGTATTACTTTGGTAGTATGCTGGCTTCTTAGAGGG 7430 Query 84 ACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATG 143 ||||| ||| |||||||| ||||||| ||| |||||||||||||| || ||||||||| Sbjct 7429 ACTATTAGCTTAAGCCGATAGAAGTTTAAGGTAATAACAGGTCTGTAATACCCTTAGATA 7370 Query 144 TTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAG 203 |||| |||| |||||| | || ||| | | ||||| ||| | || ||| |||||||| Sbjct 7369 TTCTAGGCCACACGCGTGTTATACTAATAAAGCCAGTAAGTAC-TC-TCTTAGCCGGAAG 7312 Query 204 GTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCT 263 | || ||||||||||||||||||||| | || ||||||||| |||| |||||||||||| Sbjct 7311 GCCTAGGTAATCTTGTTAAACTCTGTTATACTAGGGATAGAGTATTGTAATTATTGCTCT 7252 Query 264 TCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCT 323 | || |||||| |||||||||||| || || ||| | ||| ||||||| ||||||| Sbjct 7251 TTAATAAGGAATCCCTAGTAAGCGCAAGTTATTAGCTTGTGTTAATTACGTTTCTGCCCT 7192 Query 324 TTGTA 328 ||||| Sbjct 7191 TTGTA 7187 Score = 181 bits (200), Expect = 2e-43 Identities = 224/304 (74%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||| | |||||||||| | |||| | | || ||||||||||| || Sbjct 15470 AGACCTTAACTTACTAAATAGCCTGTATTACTTTAGTAGTATGCTGGCTTCTTAGAAAGA 15411 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| ||| ||||| |||||||| ||||| |||||| | Sbjct 15410 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAATAGGTCTGTAATGCCTTTAGATAT 15351 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||| | ||||||| || ||| | | ||| | ||| | || ||| || |||| Sbjct 15350 TCTAGGCTGTACGCGCGTTATACTAATAAAGCTAGTAAGTAC-TC-TCTTAGCTAAAAGG 15293 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||| | | | || |||| || ||| ||||||| || || Sbjct 15292 CCTAGGTAATCTTATTAAACTTTATTATACTAAAGATAAAGTATTATAATTATTACTTTT 15233 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||| |||||||||| || || ||| |||| ||||||||||||||||| Sbjct 15232 TAATAAGGAATCCCTAGTAAGCATAAGTTATTAGCTTACGTTAATTACGTCCCTGCCCTT 15173 Query 325 TGTA 328 |||| Sbjct 15172 TGTA 15169 Score = 181 bits (200), Expect = 2e-43 Identities = 224/304 (74%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||| | |||||||||| | |||| | | | ||||||||||| || Sbjct 23452 AGACCTTAACTTACTAAATAGCCTGTATTACTTTAGTAATACACTAGCTTCTTAGAGAGA 23393 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGT 144 |||| ||| |||| || ||||||| | | ||||| |||||| | || ||||||||| | Sbjct 23392 CTATTAGCTTAAGCTAATAGAAGTTTAAAGTAATAATAGGTCTATAATACCCTTAGATAT 23333 Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 ||| ||| |||||| | || ||| ||| ||||| ||| | || |||| || ||||| Sbjct 23332 TCTAGGCTGCACGCATGTTATACTAACAAAGCCAGTAAGTAC-TC-CCTTAGCTAGAAGG 23275 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 || ||||||||| ||||||||||| | || ||||| || ||| ||||||| ||||| Sbjct 23274 CCTAGGTAATCTTATTAAACTCTGTTATACTAAGGATAAAGTATTATAATTATTACTCTT 23215 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || || ||| |||||||||| ||||| ||| ||| |||||||| || ||||| Sbjct 23214 TAATAAGAAATCCCTAGTAAGCATAAGTCATTAGCTTATGTTAATTACGTCTCTACCCTT 23155 Query 325 TGTA 328 | || Sbjct 23154 TATA 23151 >seq92 Length=26029 Score = 73.4 bits (80), Expect = 7e-11 Identities = 163/244 (67%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| |||||| ||| |||| || |||||| || ||||| | || | | Sbjct 8822 GCTTCTTAGAGAGACTATTAGCTTAAGCTAATAAAAGTTTAAGATAATAATAAGTTTATA 8763 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || || |||||| |||| ||| | | || ||| | | ||| | ||| | | Sbjct 8762 ATACCTTTAGATATTCTAGGCTATATATACATTATACTAATAAAGCTAGTAAGTACTT-- 8705 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || ||| | || ||||||||| ||||||| | | | || ||| || ||| Sbjct 8704 TCTTAGCTAGAAAGCCTAGGTAATCTTATTAAACTTTATTATACTAAAAATAAAGTATTA 8645 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| ||||| || | ||| | |||||||| || || ||| |||| ||| Sbjct 8644 TAATTATTACTCTTTAATAAAAAATCCTTAGTAAGCATAAGTTATTAGCTTACGTTAATT 8585 Query 311 ACGT 314 | || Sbjct 8584 ATGT 8581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947195491328