Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq347 792 0.0
seq3 544 3e-152
seq226 181 3e-43
seq459 87.8 6e-15
>seq347
Length=5318
Score = 792 bits (878), Expect = 0.0
Identities = 499/537 (93%), Gaps = 5/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4192 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 4133
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 4132 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 4073
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| || || |||| ||||||||||||
Sbjct 4072 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 4015
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 4014 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 3958
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 3957 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 3898
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3897 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 3838
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3837 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 3778
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3777 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 3718
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3717 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 3661
>seq3
Length=27607
Score = 544 bits (602), Expect = 3e-152
Identities = 443/536 (83%), Gaps = 5/536 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||| || |||||||||||||||||||||||
Sbjct 3872 CTTTTGTTCTACTAGAGATTTCTGTTCTCCATAAGCCCCCCTTAGGACACCTGCGTTATA 3931
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||| | |||||||||||||||||||||||| |||||||| | ||||| | |
Sbjct 3932 GTTTAACAGATATACCGCCCCAGCCAAACTCCCCACCTAACAATGTCTTTAACCCAGGTT 3991
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||| || |||||||| |||||| | | | || |||| || ||| ||| |
Sbjct 3992 AGCCCGCAAAAGACCTTAAAACCAGAAGTTAGACAT--AAATCCAGCCCCACTTTATTAA 4049
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||| |||||| ||| ||||| || |||||||| ||
Sbjct 4050 ATAAGTAAAAAAACAATAGGAGTAGTAGTATTTTACTAGCGCCAAA---GCTCCCACCTA 4106
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| ||| |||| || |||| ||| ||||||||||||||||||
Sbjct 4107 TTCTACACCTCCTATGTCTTTTTACAATATCAAACTAAAGTTAAGCTCAACAGGGTCTTC 4166
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
|||||| ||| |||| || ||||| |||||||| ||| | |||| |||||||||| |||
Sbjct 4167 TTTCCCTGCTAATTCTGCTAAGCCTGTTCCCTTAGCTATAGTTTTACTAGATAGTAAATA 4226
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||| ||||||| |||||| ||| || |||| ||||||||||| | |||||||
Sbjct 4227 AGGACAGTAGGAATCTTGTTAATTTATTTATATGCGTTACTAATTAGATAATAAGGCATT 4286
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
|||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||| ||
Sbjct 4287 TGGCTACCTTAAGAGAGTTATAGTTACTCCCGCCGTTTACCTACGCTTAGTTAAATTACT 4346
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
| ||||| ||||| |||||||| | ||||||||||||||||| |||| ||||||||
Sbjct 4347 TTACTTTAACATTTAGAGCACTAGACAGAAATCACATTGCGTTAACACCACTTTCT 4402
Score = 475 bits (526), Expect = 1e-131
Identities = 428/536 (80%), Gaps = 5/536 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||| ||||| || || ||| |||||||||||||||||||
Sbjct 11854 CTTTTGTTCTACTAAAGATTTCTATTCTCTATAAGCCCCTCTTAGGACACCTGCGTTATA 11913
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||| |||| ||||||||| || |||| |||||||| | |||| | |
Sbjct 11914 GTTTAACAGATGTGCTGCCCTAGCCAAACTTCCTACCTAACAATGTCTTTAACCTAGGTT 11973
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||| || |||||||| |||||| | | || || | || | ||| ||| |
Sbjct 11974 AGCCCGCAAAAGACCTTAAAACCAGAAGTTAGACGT--AAATCTAGCCCTACTTTATTAA 12031
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||| |||||| || || | || ||||| || ||
Sbjct 12032 ATAAGTAAAAAAACAATAGGAGTAGTAGTATTTTACCAGCACTAAA---GCTCCTACCTA 12088
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||| ||||| | ||| ||| | || ||| |||||||| ||||| ||||||||||||
Sbjct 12089 TTCTATACCTCCTATGTCTTTTTATAATGTCAAACTAGAGTTAAGCTTAACAGGGTCTTC 12148
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
|||||| ||| |||| || ||||| |||| ||| ||| | ||||| |||||||||| |||
Sbjct 12149 TTTCCCTGCTAATTCTGCTAAGCCTGTTCTCTTAGCTATAGTTTCACTAGATAGTAAATA 12208
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
| |||||| ||||||| ||||| ||| |||||||| ||||||||||| | |||||||
Sbjct 12209 GAGACAGTAGGAATCTTATTAATTTATTTATGCGCGTTACTAATTAGATAATAAGGCATT 12268
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
| |||||||||||||||| ||||||||||| |||||||||| ||||| ||| |||| ||
Sbjct 12269 TAGCTACCTTAAGAGAGTTATAGTTACTCCTGCCGTTTACCTACGCTTAGTTAAATTACT 12328
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
| ||||| ||||| |||||||| ||||||||||||||| ||| |||| |||||||
Sbjct 12329 TTACTTTAACATTTAGAGCACTAGGCAGAAATCACATTACGTTAACACTACTTTCT 12384
Score = 340 bits (376), Expect = 6e-91
Identities = 399/537 (74%), Gaps = 7/537 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| | ||| ||||||||||||||| || || |||||||||||||||||||||||
Sbjct 19836 CTTTTGTTTTACTAGAGATTTCTGTTCTCTATAAGCCCCCCTTAGGACACCTGCGTTATA 19895
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||| || ||| |||||||| |||| | |||||| | |||| | |
Sbjct 19896 GTTTAACAGATGTGCCACCTTAGCTAAACTCCCTACCTAATAATGTCTTTAACCTAGGTT 19955
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATTG 185
||| | ||||||||||| |||||| | | | | | | | || | |||| |||
Sbjct 19956 AGCCTGTAAAGGACCTTAAAACCAGAA---GTTAGATATAAATCTAGCCCTGCTTTATTA 20012
Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245
| |||||||||||| ||||| ||||| |||||| ||| | | || ||| | ||||
Sbjct 20013 AATAAGTAAAAAAATAATAAGAGTAGTAGTATTTTACTAGTACTAAA---GCTTCTACTT 20069
Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
||| || |||| | ||| ||| | || || |||| ||| ||||| |||| ||||||
Sbjct 20070 ATTTTATACCTTCTATGTCTTTTTATAATGTTAAACTAAAGTTAAGCTTAACAAGGTCTT 20129
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||| | || |||| || ||||| |||| ||| ||| | |||| ||| |||||| ||
Sbjct 20130 CTTTTCTTACTAATTCTGCTAAGCCTGTTCTCTTAGCTATAGTTTTACTAAATAGTAAAT 20189
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
|| || ||| |||||| |||||| ||| || | |||||||| || | ||| ||
Sbjct 20190 AGAGATAGTAAGAATCTTATTAATCTATTTATATATATTACTAATTAAATAATAAGGTAT 20249
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485
|| |||||||||||| ||| ||||||||| | |||||| ||||| ||| |||| |
Sbjct 20250 TTAGCTACCTTAAGAAAGTTATAGTTACTTTTACTATTTACCTACGCTTAGTTAAATTAC 20309
Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
|| ||||| | ||| |||||||| || |||||| | ||| || |||| |||||||
Sbjct 20310 TTTACTTTAATATTTAGAGCACTAGGTAGAAATTATATTATGTTAACACTACTTTCT 20366
>seq226
Length=343012
Score = 181 bits (200), Expect = 3e-43
Identities = 178/228 (78%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATT 248
||||| |||| ||| | ||| | |||||| | |||||| ||||| || |||
Sbjct 322829 AAGTAGGAAAATAATAGAAGGAGTATTGTTTCACCGGAGCCGAA---GCTCCTACCTATC 322885
Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308
|||||| | | | |||| | ||| | ||| ||||||| |||||||||||||||
Sbjct 322886 CTACACATACTGTGACTTTTCGTAGTGTCAAATTAGGGTCAAGCGCAACAGGGTCTTCTT 322945
Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368
|||||| |||||| |||||||| || |||||||||||| |||||||| |||||||||||
Sbjct 322946 TCCCCGTTGATTCTGCCAAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGA 323005
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 323006 AGCAGTGGGAATCTCGTTGGTCCATTCAGGCGCGTCACTAA-TAGATG 323052
>seq459
Length=630390
Score = 87.8 bits (96), Expect = 6e-15
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65
||||| ||||| |||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 53761 TTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCTTTAGGACACCTGCGTTAT 53704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635192216448
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