Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq347 792 0.0 seq3 544 3e-152 seq226 181 3e-43 seq459 87.8 6e-15 >seq347 Length=5318 Score = 792 bits (878), Expect = 0.0 Identities = 499/537 (93%), Gaps = 5/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 4192 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 4133 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 4132 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 4073 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| || || |||| |||||||||||| Sbjct 4072 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 4015 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 4014 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 3958 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 3957 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 3898 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3897 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 3838 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3837 GGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 3778 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3777 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 3718 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3717 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 3661 >seq3 Length=27607 Score = 544 bits (602), Expect = 3e-152 Identities = 443/536 (83%), Gaps = 5/536 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||| Sbjct 3872 CTTTTGTTCTACTAGAGATTTCTGTTCTCCATAAGCCCCCCTTAGGACACCTGCGTTATA 3931 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||| | |||||||||||||||||||||||| |||||||| | ||||| | | Sbjct 3932 GTTTAACAGATATACCGCCCCAGCCAAACTCCCCACCTAACAATGTCTTTAACCCAGGTT 3991 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||| || |||||||| |||||| | | | || |||| || ||| ||| | Sbjct 3992 AGCCCGCAAAAGACCTTAAAACCAGAAGTTAGACAT--AAATCCAGCCCCACTTTATTAA 4049 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||| |||||| ||| ||||| || |||||||| || Sbjct 4050 ATAAGTAAAAAAACAATAGGAGTAGTAGTATTTTACTAGCGCCAAA---GCTCCCACCTA 4106 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| ||| |||| || |||| ||| |||||||||||||||||| Sbjct 4107 TTCTACACCTCCTATGTCTTTTTACAATATCAAACTAAAGTTAAGCTCAACAGGGTCTTC 4166 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||| ||| |||| || ||||| |||||||| ||| | |||| |||||||||| ||| Sbjct 4167 TTTCCCTGCTAATTCTGCTAAGCCTGTTCCCTTAGCTATAGTTTTACTAGATAGTAAATA 4226 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 ||||||| ||||||| |||||| ||| || |||| ||||||||||| | ||||||| Sbjct 4227 AGGACAGTAGGAATCTTGTTAATTTATTTATATGCGTTACTAATTAGATAATAAGGCATT 4286 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||| || Sbjct 4287 TGGCTACCTTAAGAGAGTTATAGTTACTCCCGCCGTTTACCTACGCTTAGTTAAATTACT 4346 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 | ||||| ||||| |||||||| | ||||||||||||||||| |||| |||||||| Sbjct 4347 TTACTTTAACATTTAGAGCACTAGACAGAAATCACATTGCGTTAACACCACTTTCT 4402 Score = 475 bits (526), Expect = 1e-131 Identities = 428/536 (80%), Gaps = 5/536 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||| ||||| || || ||| ||||||||||||||||||| Sbjct 11854 CTTTTGTTCTACTAAAGATTTCTATTCTCTATAAGCCCCTCTTAGGACACCTGCGTTATA 11913 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||| |||| ||||||||| || |||| |||||||| | |||| | | Sbjct 11914 GTTTAACAGATGTGCTGCCCTAGCCAAACTTCCTACCTAACAATGTCTTTAACCTAGGTT 11973 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||| || |||||||| |||||| | | || || | || | ||| ||| | Sbjct 11974 AGCCCGCAAAAGACCTTAAAACCAGAAGTTAGACGT--AAATCTAGCCCTACTTTATTAA 12031 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||| |||||| || || | || ||||| || || Sbjct 12032 ATAAGTAAAAAAACAATAGGAGTAGTAGTATTTTACCAGCACTAAA---GCTCCTACCTA 12088 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||| ||||| | ||| ||| | || ||| |||||||| ||||| |||||||||||| Sbjct 12089 TTCTATACCTCCTATGTCTTTTTATAATGTCAAACTAGAGTTAAGCTTAACAGGGTCTTC 12148 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||| ||| |||| || ||||| |||| ||| ||| | ||||| |||||||||| ||| Sbjct 12149 TTTCCCTGCTAATTCTGCTAAGCCTGTTCTCTTAGCTATAGTTTCACTAGATAGTAAATA 12208 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 | |||||| ||||||| ||||| ||| |||||||| ||||||||||| | ||||||| Sbjct 12209 GAGACAGTAGGAATCTTATTAATTTATTTATGCGCGTTACTAATTAGATAATAAGGCATT 12268 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 | |||||||||||||||| ||||||||||| |||||||||| ||||| ||| |||| || Sbjct 12269 TAGCTACCTTAAGAGAGTTATAGTTACTCCTGCCGTTTACCTACGCTTAGTTAAATTACT 12328 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 | ||||| ||||| |||||||| ||||||||||||||| ||| |||| ||||||| Sbjct 12329 TTACTTTAACATTTAGAGCACTAGGCAGAAATCACATTACGTTAACACTACTTTCT 12384 Score = 340 bits (376), Expect = 6e-91 Identities = 399/537 (74%), Gaps = 7/537 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| | ||| ||||||||||||||| || || ||||||||||||||||||||||| Sbjct 19836 CTTTTGTTTTACTAGAGATTTCTGTTCTCTATAAGCCCCCCTTAGGACACCTGCGTTATA 19895 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||| || ||| |||||||| |||| | |||||| | |||| | | Sbjct 19896 GTTTAACAGATGTGCCACCTTAGCTAAACTCCCTACCTAATAATGTCTTTAACCTAGGTT 19955 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATTG 185 ||| | ||||||||||| |||||| | | | | | | | || | |||| ||| Sbjct 19956 AGCCTGTAAAGGACCTTAAAACCAGAA---GTTAGATATAAATCTAGCCCTGCTTTATTA 20012 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | |||||||||||| ||||| ||||| |||||| ||| | | || ||| | |||| Sbjct 20013 AATAAGTAAAAAAATAATAAGAGTAGTAGTATTTTACTAGTACTAAA---GCTTCTACTT 20069 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||| || |||| | ||| ||| | || || |||| ||| ||||| |||| |||||| Sbjct 20070 ATTTTATACCTTCTATGTCTTTTTATAATGTTAAACTAAAGTTAAGCTTAACAAGGTCTT 20129 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||| | || |||| || ||||| |||| ||| ||| | |||| ||| |||||| || Sbjct 20130 CTTTTCTTACTAATTCTGCTAAGCCTGTTCTCTTAGCTATAGTTTTACTAAATAGTAAAT 20189 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 || || ||| |||||| |||||| ||| || | |||||||| || | ||| || Sbjct 20190 AGAGATAGTAAGAATCTTATTAATCTATTTATATATATTACTAATTAAATAATAAGGTAT 20249 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 || |||||||||||| ||| ||||||||| | |||||| ||||| ||| |||| | Sbjct 20250 TTAGCTACCTTAAGAAAGTTATAGTTACTTTTACTATTTACCTACGCTTAGTTAAATTAC 20309 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 || ||||| | ||| |||||||| || |||||| | ||| || |||| ||||||| Sbjct 20310 TTTACTTTAATATTTAGAGCACTAGGTAGAAATTATATTATGTTAACACTACTTTCT 20366 >seq226 Length=343012 Score = 181 bits (200), Expect = 3e-43 Identities = 178/228 (78%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATT 248 ||||| |||| ||| | ||| | |||||| | |||||| ||||| || ||| Sbjct 322829 AAGTAGGAAAATAATAGAAGGAGTATTGTTTCACCGGAGCCGAA---GCTCCTACCTATC 322885 Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 |||||| | | | |||| | ||| | ||| ||||||| ||||||||||||||| Sbjct 322886 CTACACATACTGTGACTTTTCGTAGTGTCAAATTAGGGTCAAGCGCAACAGGGTCTTCTT 322945 Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 |||||| |||||| |||||||| || |||||||||||| |||||||| ||||||||||| Sbjct 322946 TCCCCGTTGATTCTGCCAAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGA 323005 Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||| |||||||| |||||||||||| |||||| Sbjct 323006 AGCAGTGGGAATCTCGTTGGTCCATTCAGGCGCGTCACTAA-TAGATG 323052 >seq459 Length=630390 Score = 87.8 bits (96), Expect = 6e-15 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 ||||| ||||| |||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 53761 TTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCTTTAGGACACCTGCGTTAT 53704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635192216448